hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm02096/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1764  ( 1034 res)   mpm02096

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_1    Leucine Rich Repeat                             46.8    4.9e-10   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_1      1/5      47    68 ..     1    25 []     5.2  2.8e+02
LRR_1      2/5      69    90 ..     1    25 []    18.6     0.15
LRR_1      3/5      91   112 ..     1    25 []    10.1       43
LRR_1      4/5     113   134 ..     1    25 []    13.6      4.7
LRR_1      5/5     139   160 ..     1    25 []    11.9       15

Alignments of top-scoring domains:
LRR_1: domain 1 of 5, from 47 to 68: score 5.2, E = 2.8e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      ++  ++L++ N ++s  +++ +++     
   mKIAA1764    47    SIHAINLHC-N-NIS-KISS-IdHIW    68   

LRR_1: domain 2 of 5, from 69 to 90: score 18.6, E = 0.15
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nL++LdLs+ N ++s  ++  l+ l+   
   mKIAA1764    69    NLRHLDLSS-N-QIS-QIEG-LnTLT    90   

LRR_1: domain 3 of 5, from 91 to 112: score 10.1, E = 43
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L +L+Ls+ N  ++  ++  l+ l    
   mKIAA1764    91    KLCTLNLSC-N-LIT-RVEG-LeALV    112  

LRR_1: domain 4 of 5, from 113 to 134: score 13.6, E = 4.7
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nL++L+Ls+ N +++ +l+  l  l    
   mKIAA1764   113    NLTKLNLSY-N-HIN-DLSG-LmPLH    134  

LRR_1: domain 5 of 5, from 139 to 160: score 11.9, E = 15
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L+++dL++ N ++ +s++  l  ++   
   mKIAA1764   139    KLRYIDLHS-N-YI-DSIHH-LlQCT    160  

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