hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj36281/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1763 ( 1330 res) mfj36281 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Laminin_G_2 Laminin G domain 425.1 6.5e-124 4 Laminin_G_1 Laminin G domain 178.9 8.1e-50 4 F5_F8_type_C F5/8 type C domain 142.9 5.8e-39 1 EGF EGF-like domain 47.8 2.5e-10 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- F5_F8_type_C 1/1 65 196 .. 1 163 [] 142.9 5.8e-39 Laminin_G_2 1/4 234 363 .. 1 141 [] 114.3 2.4e-30 Laminin_G_1 1/4 234 366 .. 1 154 [] 31.3 1.7e-05 Laminin_G_2 2/4 420 546 .. 1 141 [] 115.2 1.3e-30 Laminin_G_1 2/4 420 549 .. 1 154 [] 69.1 9.3e-17 EGF 1/2 575 607 .. 1 39 [] 32.6 8.9e-06 Laminin_G_2 3/4 843 962 .. 1 141 [] 120.8 2.6e-32 Laminin_G_1 3/4 843 965 .. 1 154 [] 72.9 6.5e-18 EGF 2/2 984 1018 .. 1 39 [] 23.5 0.0051 Laminin_G_2 4/4 1068 1198 .. 1 141 [] 83.8 3.5e-21 Laminin_G_1 4/4 1068 1201 .. 1 154 [] 9.8 0.0014 Alignments of top-scoring domains: F5_F8_type_C: domain 1 of 1, from 65 to 196: score 142.9, E = 5.8e-39 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse + ++Sse s+s+g+g+arL+ DG ++Ws+ mKIAA1763 65 SFSSSSELSSSHGPGFARLNRR-----DGA-----------GGWSP- 94 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggngyvksYkiqySd +++ qwlq+DLg+ +++t+v tqg++++ n +v+sY ++ Sd mKIAA1763 95 LV------SNKYQWLQIDLGERMEVTSVATQGGYGSSN-WVTSYLLMFSD 137 DGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppikARY G + nW+++++ ++ + F+gn ++d++v+ + p+ikAR+ mKIAA1763 138 SG-R--NWKQYRQ--------EDsIWGFsGNaNADsVVYYRLQPSIKARF 176 vRivptswnggggiasraEl<-* +R++p++wn+ g+i++r E+ mKIAA1763 177 LRFIPLEWNPKGRIGMRIEV 196 Laminin_G_2: domain 1 of 4, from 234 to 363: score 114.3, E = 2.4e-30 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLvdGrlvlrydl F+T +++G+Ll+ +g g d +++LeL+ G+l l ++ mKIAA1763 234 FKT-MESDGILLHRAGPaG---------D-HITLELRRGKLFLLINS 269 G......sgg.vlltsg.klnDGqWHtVsverngrsvtLsVDgg.vv.g. G+ + ++s++ + lt g+ l+D +WH+V + r g++v ++VD ++ + mKIAA1763 270 GdarltsSSTlINLTLGsLLDDQHWHSVLIQRLGKQVNFTVDEHrRHfHa 319 spgssdtlslnlngplylGGlpessksslltltaaqnlvvvs.gFvGCir +++ + +l+l++++ +GG+ +ks +l+ ++F+GC++ mKIAA1763 320 QGEFN---YLDLDYEISFGGISAPAKSVSLP----------YkHFHGCLE 356 dvringe<-* ++++ng+ mKIAA1763 357 NLFYNGV 363 Laminin_G_1: domain 1 of 4, from 234 to 366: score 31.3, E = 1.7e-05 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvdGrlevsydl F+T e++G+Ll ++++++g D + leL++G+l + + mKIAA1763 234 FKTMESDGILL-----HRAGPAG------DHITLELRRGKLFLLINS 269 Gsghrl....rpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeervv G+ rl+++++ + ++ g l+D +WH+v + r g++++ Vd+ +r mKIAA1763 270 GDA-RLtsssTLINLTLGSL-LDDQHWHSVLIQRLGKQVNFTVDEHRR-- 315 dgespsgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCi + + + ++ Ldld++ + +GG+ + ksv+ + + F+GC+ mKIAA1763 316 HFHAQGEFNY----LDLDYE--ISFGGISAPAKSVSLPY----KHFHGCL 355 rdvsingkpld<-* ++ ng+ + mKIAA1763 356 ENLFYNGVDVI 366 Laminin_G_2: domain 2 of 4, from 420 to 546: score 115.2, E = 1.3e-30 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLvdGrlvlrydl FRT + + GlLl+++ + s+ l L L dG+l+l++ mKIAA1763 420 FRT-WNKAGLLLFSELQlV--------SG-SLLLLLSDGKLKLTLYQ 456 Gsgg.vlltsg.klnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd ++ ++ +t g l DGqWH+Vs++ ++++++++VDg+ + ++ g++ mKIAA1763 457 PGKSpSDITAGaGLGDGQWHSVSLSAKRNHLSVVVDGHiSPaSpWLGPE- 505 tlslnlngplylGGlpessksslltltaaqnlvvvs.gFvGCirdvring ++n g +y+GG+p+ ++ s ++++ +gF+GC+r + in+ mKIAA1763 506 --QVNSGGVFYFGGCPDKGFGSKCKSP--------LgGFQGCMRLISINN 545 e<-* + mKIAA1763 546 K 546 Laminin_G_1: domain 2 of 4, from 420 to 549: score 69.1, E = 9.3e-17 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvdGrlevs.yd FRT++ GlLl + ++ l+l L dG+l+++ y+ mKIAA1763 420 FRTWNKAGLLL--FSELQLVSGS--------LLLLLSDGKLKLTlYQ 456 lGsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeervvdge G+ p +++g+ l DG+WH+v+l++ + ++++ Vdg + + mKIAA1763 457 PGKS----PSDITAGAG-LGDGQWHSVSLSAKRNHLSVVVDGHIS---PA 498 sp.sgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCird sp +gp++ ++ + +y+GG P +k++ +++ + +F GC+r mKIAA1763 499 SPwLGPEQ----VNSGGV--FYFGGCP--DKGFGSKCKSPLGGFQGCMRL 540 vsingkpld<-* +sin+k++d mKIAA1763 541 ISINNKMVD 549 EGF: domain 1 of 2, from 575 to 607: score 32.6, E = 8.9e-06 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C pn C +gG+C +++++++C C+ +ytG +C mKIAA1763 575 CLPN--SCEHGGECSQSWSTFHCNCTNT----GYTGATC 607 Laminin_G_2: domain 3 of 4, from 843 to 962: score 120.8, E = 2.6e-32 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLvdGr.lvlryd F+T t+ +G+ l + g ++ f+ +eL+ +++++++d mKIAA1763 843 FKT-TALSGVFLENLGItD-----------FIRIELRSPTtVTFSFD 877 lG.sgg.vlltsg.klnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs G+++ ++++ s++++nD+qWH+V+vern ++++L VD ++ + +p + mKIAA1763 878 VGnGPFeLSVHSPtHFNDNQWHHVRVERNMKEASLRVDELpPKiQaAPTD 927 sdtlslnlngplylGGlpessksslltltaaqnlvvvs.gFvGCirdvri ++ l+ln++l++GG ++gF GCir++++ mKIAA1763 928 GHV-LLQLNSQLFVGGTATR-----------------QrGFLGCIRSLQL 959 nge<-* ng mKIAA1763 960 NGM 962 Laminin_G_1: domain 3 of 4, from 843 to 965: score 72.9, E = 6.5e-18 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvd.Grlevsyd F+Tt+ sG+ l +n ++ DF+ +eL+ + +++s+d mKIAA1763 843 FKTTALSGVFL-----ENLGIT-------DFIRIELRSpTTVTFSFD 877 lGsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeervvdge +G+g + +v+s++ +nD++WH+v +ern ++++L+Vd+ + + mKIAA1763 878 VGNG--PFELSVHSPTH-FNDNQWHHVRVERNMKEASLRVDELPP---KI 921 spsgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCirdv + ++d+ + L+l+ + L+vGG+ +++F GCir++ mKIAA1763 922 QAAPTDG-HVLLQLNSQ--LFVGGTA-----------TRQRGFLGCIRSL 957 singkpld<-* +ng+ ld mKIAA1763 958 QLNGMALD 965 EGF: domain 2 of 2, from 984 to 1018: score 23.5, E = 0.0051 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C + C +gG+C++ p+g++C+C +y+G++C mKIAA1763 984 CGSYGKLCRHGGKCREKPSGFFCDCSSS----AYAGPFC 1018 Laminin_G_2: domain 4 of 4, from 1068 to 1198: score 83.8, E = 3.5e-21 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLv.dGrlvlryd FRT t++ lLl++++ + +l++ + ++G l++ry+ mKIAA1763 1068 FRT-TRAPSLLLHMSSFyK---------E-YLSIIIAkNGSLQIRYK 1103 lG..sgg.vlltsg.klnDGqWHtVsverngrsvtLsVDgg.vv.g.spg l++ ++++v+ ++ ++++DGq H++++ r+++ v +++D + +++ +++ mKIAA1763 1104 LNkyHEPdVISFDLkSMADGQLHHIKINREEGMVFVEIDENtRRqTyLSS 1153 ssdtlslnlngplylGGlpessksslltltaaqnlvvvs.gFvGCirdvr ++ + +++l lG + e s++ t aa +gF+GC++ v+ mKIAA1763 1154 GT---EFSAVKSLVLGRMLEYSDVDQETALAA------AhGFTGCLSAVQ 1194 inge<-* + ++ mKIAA1763 1195 FSHI 1198 Laminin_G_1: domain 4 of 4, from 1068 to 1201: score 9.8, E = 0.0014 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLv.dGrlevsyd FRTt lLl + + + +l++ + ++G l+++y+ mKIAA1763 1068 FRTTRAPSLLL--HMSSFYKE---------YLSIIIAkNGSLQIRYK 1103 lGsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeervvdge l + h +p v+ + + +DG+ H+++++r++ +++ +d++ r + + mKIAA1763 1104 LNKYH--EPDVISFDLKSMADGQLHHIKINREEGMVFVEIDENTR--RQT 1149 spsgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCirdv + s+++ ++++ L +G + e + +++ ++a ++F GC+ v mKIAA1763 1150 YLSSGTE----FSAVKS--LVLGRMLEYSDVDQETALAAAHGFTGCLSAV 1193 singkpld<-* +++ + mKIAA1763 1194 QFSHIAPL 1201 //