hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic23055/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1758  ( 1565 res)   mic23055

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                 137.7    2.1e-37   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/5     731   763 ..     1    33 []    35.2  1.5e-06
Ank        2/5     764   796 ..     1    33 []    31.0  2.7e-05
Ank        3/5     797   829 ..     1    33 []    39.5  7.7e-08
Ank        4/5     830   867 ..     1    33 []    18.1     0.22
Ank        5/5     899   932 ..     1    33 []    16.5     0.65

Alignments of top-scoring domains:
Ank: domain 1 of 5, from 731 to 763: score 35.2, E = 1.5e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG ++L  Aa++g++++v+lLl++ A ++a d+   
   mKIAA1758   731    DGHSALYSAAKNGHTDCVRLLLNAEARVDAADK    763  

Ank: domain 2 of 5, from 764 to 796: score 31.0, E = 2.7e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +GfTPL +Aa  g+ e+++lL  + A++n+      
   mKIAA1758   764    NGFTPLCVAAAQGHFECIELLTAYNANINHSAA    796  

Ank: domain 3 of 5, from 797 to 829: score 39.5, E = 7.7e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+TPL lA+++gn+e++klLl++G d  ++++   
   mKIAA1758   797    GGQTPLYLACKNGNKECIKLLLEAGTDRSIKTR    829  

Ank: domain 4 of 5, from 830 to 867: score 18.1, E = 0.22
                   *->dGfTPLHlAalrgnlevvklLls.....qGAdlnaqdd<-*
                      dG+TP+H A+  gn++ +klL++++ + +G +l        
   mKIAA1758   830    DGWTPIHAAVDTGNVDSLKLLMYhrvraHGNSLSSEEP    867  

Ank: domain 5 of 5, from 899 to 932: score 16.5, E = 0.65
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                      +G+T+ H+Aa++g +++++ L  + G ++  +d+   
   mKIAA1758   899    EGWTAAHIAASKGFKNCLEVLCRhGGLEPERRDK    932  

//