hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg10960/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1757  ( 1450 res)   mbg10960

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SET      SET domain                                     115.5    9.9e-31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SET        1/1     276   406 ..     1   261 []   115.5  9.9e-31

Alignments of top-scoring domains:
SET: domain 1 of 1, from 276 to 406: score 115.5, E = 9.9e-31
                   *->vqkgrwarlegfktegkGwGlratedIpkGefiiEYpGelitseeae
                      +q+  ++ +     + +   lra++d++ +++iiEY+G+++ ++++e
   mKIAA1757   276    SQMQLQLGRVTRVQK-HRKILRAARDLALDTLIIEYRGKVMLRQQFE 321  

                   kreddllgpkyydddgdksldeYlfdldalfLlrEkleSWkpYiiLPtys
                    ++           +  k++  Y f l +                     
   mKIAA1757   322 VNG-----------HFFKKP--YPFVLFY--------------------- 337  

                   PlfWseeeleLkGTqllevdkeeleeydllaeeievflqhklFpdveeef
                                                                     
   mKIAA1757     - -------------------------------------------------- -    

                   sfedflWaasivsSRafslvegvnreeensegslelviDAtrkGNiaRFi
                                S ++ +               e+++DA+  GN aRFi
   mKIAA1757   338 -------------SKFNGV---------------EMCVDARTFGNDARFI 359  

                   NHSCePNcevqvvfvdgedlgdsdvtDeaglepgdprivlfAlrdIpaGe
                   ++SC+PN+ev++++ d                 g ++++++A   I ++ 
   mKIAA1757   360 RRSCTPNAEVRHMIAD-----------------GMIHLCIYAVSAITKDA 392  

                   ELtydYgydksnge<-*
                   E+t+ ++y++sn++   
   mKIAA1757   393 EVTIAFDYEYSNCN    406  

//