hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph01858/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1753  ( 826 res)   mph01858

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C3H1 zinc finger                                     64.4    1.5e-14   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C3H1   1/5     101   128 ..     1    31 []    24.0    0.021
ZnF_C3H1   2/5     142   169 ..     1    31 []     2.6       51
ZnF_C3H1   3/5     231   256 ..     1    31 []    14.6      1.6
ZnF_C3H1   4/5     267   300 ..     1    31 []    19.5      0.4
ZnF_C3H1   5/5     309   336 ..     1    31 []    26.8   0.0029

Alignments of top-scoring domains:
ZnF_C3H1: domain 1 of 5, from 101 to 128: score 24.0, E = 0.021
                   *->kyktelCkfF.arrGppgyCpyGdrCkfaHpl<-*
                      ++  + C ++++++G    Cp Gd+C+f+H     
   mKIAA1753   101    SPD-VYCTKYdEATG---LCPEGDECPFLHRT    128  

ZnF_C3H1: domain 2 of 5, from 142 to 169: score 2.6, E = 51
                   *->kyktelCkfF..arrGppgyCpyGd.rCkfaHpl<-*
                      k++  +C   ++  +G   +C ++  +C faH++   
   mKIAA1753   142    KTG--ICI-HetDSKG---NCTKNGlHCAFAHGP    169  

ZnF_C3H1: domain 3 of 5, from 231 to 256: score 14.6, E = 1.6
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                      +ykte+Ck+      p+ C+ G  C++ H+    
   mKIAA1753   231    NYKTEPCKKP-----PRLCRQGYACPYYHNS    256  

ZnF_C3H1: domain 4 of 5, from 267 to 300: score 19.5, E = 0.4
                   *->kyktelCkfFarrGp....pgyCpyGdrCkfaHpl<-*
                      ky+  +C++  ++G + ++pg C  Gd C++ H +   
   mKIAA1753   267    KYRSSPCPNV-KHGDewgdPGKCENGDACQYCHTR    300  

ZnF_C3H1: domain 5 of 5, from 309 to 336: score 26.8, E = 0.0029
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                       yk + C + ++ G    Cp+G+ C faH++   
   mKIAA1753   309    IYKSTKCNDMQQAG---SCPRGPFCAFAHIE    336  

//