hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh04593/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1747  ( 788 res)   mbh04593

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MACPF    membrane-attack complex / perforin             179.9    2.4e-49   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MACPF      1/1      94   286 ..     1   232 []   179.9  2.4e-49

Alignments of top-scoring domains:
MACPF: domain 1 of 1, from 94 to 286: score 179.9, E = 2.4e-49
                   *->qflvardtVrvrlytvklde.sdlplaleFlkalrdLpdqynsansp
                      ++++ar++V++++ ++++ ++++lpla+eF +++r L++++n +   
   mKIAA1747    94    YREFARWKVNNLALERRDFFsLPLPLAPEFVRNIRLLGRRPNLQ--- 137  

                   dqayarfiddYGTHYitSatlGGeyslllvldkeslerkgwltsediskc
                    q  +++i++YGTH++ SatlGGe+sl++++dk +l+rk      +++++
   mKIAA1747   138 -QVTENLIKKYGTHFLLSATLGGEESLTIFVDKRKLSRK------SETTG 180  

                   lngeakvelassnlvagsvsaemkhctqssssskslstresqtvrlshtq
                     ++  v++  +n+ a+s+++   h++++s++++++st +    rl+h+q
   mKIAA1747   181 GIPV--VGG-PGNSSAVSLETL--HQLAASYFIDRESTLR----RLHHIQ 221  

                   vlGGaseaievledlergrkgclqsnsldfseWaesvpneaPvlidvksl
                   +++G   ai+v+e+++++    l+++++d+ ++++sv  + + + +v +l
   mKIAA1747   222 IATG---AIKVTETRTGP----LGCSNYDNLDSVSSVLVQ-SPENKV-QL 262  

                   aPiyeLlpespfpvlvaleaspkreaLrqAlesYlk<-*
                    ++++Llpe             +re ++ A++sY++   
   mKIAA1747   263 LGLQVLLPEH------------LRERFVAAALSYIT    286  

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