hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic07065/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1746  ( 1070 res)   mic07065

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HEAT     HEAT repeat                                     35.5    1.3e-06   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HEAT       1/3     819   850 ..     1    36 []     5.7       39
HEAT       2/3     928   964 ..     1    36 []    24.7   0.0022
HEAT       3/3     969  1006 ..     1    36 []     7.9       19

Alignments of top-scoring domains:
HEAT: domain 1 of 3, from 819 to 850: score 5.7, E = 39
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      ++++      +l  ++Dp+   R+aA+++L++ +e+    
   mKIAA1746   819    QqFR-----EVLLSACDPEVPTRAAALRTLARWVEQR    850  

HEAT: domain 2 of 3, from 928 to 964: score 24.7, E = 0.0022
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      +++++ l+ ++l++ +Dpd+  R++++  Lg+l+++l   
   mKIAA1746   928    SkYREPLIHTFLRGVRDPDAAHRASSLANLGELCQCL    964  

HEAT: domain 3 of 3, from 969 to 1006: score 7.9, E = 19
                   *->e.lldellplllklln.DpdpeVReaAaeaLgalaevl<-*
                       ++++e+  +l+  +++D+d  VR+aA+  ++ l++ l   
   mKIAA1746   969    GpVVHEVTACLIAVAKtDNDVQVRRAAVHVVVLLLRGL    1006 

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