hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid29072/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1745  ( 871 res)   mid29072

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PSI      domain found in Plexins, Semaphorins and Int    45.0    9.9e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/1     560   630 ..     1    56 []    45.0  9.9e-09

Alignments of top-scoring domains:
PSI: domain 1 of 1, from 560 to 630: score 45.0, E = 9.9e-09
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg.............
                      +Cs y  ++C++Cllardpy C+W   +++C  ++  +++  +++ +
   mKIAA1745   560    NCSLY--PTCGDCLLARDPY-CAWT--GSACRLAslyqpdlasrpwt 601  

                   .........erCderrgsrqnwssg.pssqCp<-*
                   ++ ++ + +e C +   s ++++++ p++ C    
   mKIAA1745   602 qdiegasvkELCKN---SSYKARFLvPGKPCK    630  

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