hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid29072/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1745  ( 871 res)   mid29072

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sema     Sema domain                                    524.8   6.3e-154   1
PSI      Plexin repeat                                   42.1    1.2e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sema       1/1     105   542 ..     1   490 []   524.8 6.3e-154
PSI        1/1     560   608 ..     1    63 []    42.1  1.2e-08

Alignments of top-scoring domains:
Sema: domain 1 of 1, from 105 to 542: score 524.8, E = 6.3e-154
                   *->frtllldedrgrLyVGArNhvyvLnledlser...lqqkigWpsspg
                      + +lll+ d+ +LyVGAr+++++Ln  +ls ++++++q++ W ++  
   mKIAA1745   105    YTALLLSQDGKTLYVGAREALFALN-SNLSFLpggEYQELLWSAD-- 148  

                   eekceeCkmkgkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtl
                   +++++ C  kgk+p   + +CqN+i++L+p n++hL+ CGT aF+P+C +
   mKIAA1745   149 ADRKQQCSFKGKDP---KRDCQNYIKILLPLNSSHLLTCGTAAFSPLCAY 195  

                   inlgdrseaviiaetdcLFsldvek.....eesGkgrCPydPlhnstsvl
                   i + +             F+l +++ ++  +e+GkgrCP+dP   st+++
   mKIAA1745   196 IHIAS-------------FTLAQDEagnviLEDGKGRCPFDPNFKSTALV 232  

                   vqgrtgeLYsGtviDssvaasFsGrdpaIrRslgshdplrTeqhdskwln
                   v +  geLY+Gtv+       F G+dpaI Rs  s++  +    +  wl 
   mKIAA1745   233 V-D--GELYTGTVSS------FQGNDPAISRSQSSRPTKTESSLN--WLQ 271  

                   ePnFVdsypipyvhsf...dDdkVYFFFrEtaveyspnsgkaiysRVaRv
                   +P FV+s  +p++   + +dDdk+YFFF Et  e++ +++ +i+sRVaRv
   mKIAA1745   272 DPAFVASAYVPESLGSpigDDDKIYFFFSETGQEFE-FFENTIVSRVARV 320  

                   CknDvGGrrylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllpt
                   Ck+D+GG+r l+  +WT+FLKA+L CS+p+ +g+p   FN+LQ+vf+l +
   mKIAA1745   321 CKGDEGGERVLQ-QRWTSFLKAQLLCSRPD-DGFP---FNVLQDVFTLNP 365  

                   ganlAreLgIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFe
                     +       ++r +++YGVFt+++  +      SA+C+F+m+d++ +F 
   mKIAA1745   366 NPQ-------DWRKTLFYGVFTSQWHRGTT--EGSAICVFTMNDVQKAF- 405  

                   nGpfkhqsnEgpnskwlpyrglkvPyPRPGqCpndssgp.nytStkdlPD
                   +G +k  ++   +++w++ + ++vP+PRPG C+++s +++ + S++ lPD
   mKIAA1745   406 DGLYKKVNR--ETQQWYT-ETHQVPTPRPGACITNSARErKINSSLQLPD 452  

                   dtlnfikshpLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGql
                   ++lnf k+h+Lmd    ++  r l+ +++   r+  +aV  rV+++   +
   mKIAA1745   453 RVLNFLKDHFLMDG---QVRSRLLLLQPRA--RYQRVAVH-RVPGLH-ST 495  

                   YtVlFlGTddGtvlKkvvvlsrsss.syeevvleelqvfkdpriePvqnl
                   Y+VlFlGT dG+++ k+v+l  ss+ +    ++eelq+f+ +   Pvqnl
   mKIAA1745   496 YDVLFLGTGDGRLH-KAVTL--SSRvH----IIEELQIFPQG--QPVQNL 536  

                   eisskq<-*
                   ++ s     
   mKIAA1745   537 LLDSHG    542  

PSI: domain 1 of 1, from 560 to 608: score 42.1, E = 1.2e-08
                   *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfyGeCprae.
                      nCs y++C++CL+ardp yC+W +s   C + s y     + + a++
   mKIAA1745   560    NCSLYPTCGDCLLARDP-YCAWTGS--ACRLASLY-----QPDLASr 598  

                   pendqwldwswssskCp<-*
                   p       w+++ ++     
   mKIAA1745   599 P-------WTQDIEGAS    608  

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