hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtg/mtg01952/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1744  ( 1157 res)   mtg01952

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
zf-CCHC    Zinc knuckle                                  29.8    6.3e-05   1
Extensin_2 Extensin-like region                        -139.6        0.5   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Extensin_2   1/1     742  1106 ..     1   385 []  -139.6      0.5
zf-CCHC      1/1    1121  1138 ..     1    18 []    29.8  6.3e-05

Alignments of top-scoring domains:
Extensin_2: domain 1 of 1, from 742 to 1106: score -139.6, E = 0.5
                   *->lltlvvalvslslpseasakYsYsSPPPpekpY..........vYkS
                      l +lv+  v++s   e+s     s P     p  +++++++ +   S
   mKIAA1744   742    LGMLVPNAVAISAVMESS----NSAPVGILGPAasgesekhleLLAS 784  

                   P.PpPspkyvykSPPPpkkpYvYsS..PPPPsyvykSPPPPkpyvYkSPP
                   P P+Ps  +  +S  P+  +   +S +  PP     S P         PP
   mKIAA1744   785 PlPLPS-TFLPHSSAPA-LQLTLQSlkLQPPQGSSDSCPVS------IPP 826  

                   pP..kyvYkSPPp...PvykYkS.PPPPthsppPpyvykSPPPPpkkyvy
                   +P+++    SP +   Pv    S P  P+      ++ kS P        
   mKIAA1744   827 QPtgSLSIGSPNTafiPVHNPGSfPGSPV--ATTDPITKSAPQVV--GLN 872  

                   kSpPpptPvYkYkSPPPPpyvYkspPpPvkkripyvYkSPPPPpPYvYkS
                   + +P +         P P+ v    P+      ++  + P P +P    S
   mKIAA1744   873 QMVPQIEG--NTGTVPQPSNVKVVLPAAGLSAAQPPASFPFPGSP-QAAS 919  

                   pPppvkkyiyksppppephkYvYkSPPPPpPYvyesvpeqkikYvYkSPP
                   + p         + + +       S  P +     s+         +S  
   mKIAA1744   920 ALPTQ------NSSALNAA----TSAQPAS--TGISPS--------QSTV 949  

                   PPkksYkspsppkyVYkSpPpPvipykYkSPPPPkkkyspaPrkpyvYkS
                   PP           + +   P P         P P   +s a   +  Y S
   mKIAA1744   950 PPA---------VPTHTPGPAPS--------PSPALTHSTAQSDSTSYIS 982  

                   PPPPtyvYkSpPpPyk.................pptppkiyksPPPPtPv
                       t       pP++ ++ ++ +++ + ++++  +   +y   P P P+
   mKIAA1744   983 AVGNTNANGTIVPPQQmgpcgscgrrcscgtngNLQLNSYYYPNPMPGPM 1032 

                   yvYkspPpippik.sssppPvyvYkSpPppvysPPPPyvYssPPPPvyvy
                   y   s   +p i + s    +   +    p + P  Py       Pv + 
   mKIAA1744  1033 YRLPSFFTLPSICnGSYLNQAHQSNGNQLPFFLPQTPYANGLVHDPV-MG 1081 

                   nsaPvykksPPkhhYiYsSPPPphh<-*
                   + a   ++        Y   P p     
   mKIAA1744  1082 SQASYGMQQMAGFGRLYPVYPAPNV    1106 

zf-CCHC: domain 1 of 1, from 1121 to 1138: score 29.8, E = 6.3e-05
                   *->rkCynCGkpGHiardCpe<-*
                      + CynCG  GH+a dC++   
   mKIAA1744  1121    VSCYNCGVSGHYAQDCKQ    1138 

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