hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg02378/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1743 ( 811 res) mbg02378 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RasGAP GTPase-activator protein for Ras-like GTPase 425.8 2.4e-123 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RasGAP 1/1 1 330 [. 1 390 [] 425.8 2.4e-123 Alignments of top-scoring domains: RasGAP: domain 1 of 1, from 1 to 330: score 425.8, E = 2.4e-123 *->lkqgelgslrlktvyttdfilpseaYeeLleLllesvdvepltasla +r+k++y+t+ ilp+e Y+e+ e ++++++ l+ mKIAA1743 1 --------IRIKARYQTVSILPMEMYKEFAEHITNHYL------GLC 33 saleevcsvldkdelAtkLvrlFlrrgrgkpfLraLidkEvertddpvnt +ale+++s +k+e A++Lv++++++g+ k+fL++L + Ev+r+ d+ ++ mKIAA1743 34 AALEPILSAKTKEEMASALVHILQSTGKVKDFLTDLMMSEVDRCGDNEHL 83 lFRgNsLatKsmevymklvGnqYLhttLkpvLkkiveekkescEvDPsKl +FR+N+LatK++e+y+klvG++YL+++L++++k+++e+++ +cEvDPsK+ mKIAA1743 84 IFRENTLATKAIEEYLKLVGQKYLQDALGEFIKALYESDE-NCEVDPSKC 132 evndviSfgdpvegedletnlenLlqyverlfdaIinSsdrlPygLRdic + ++dl +++ nL +++e +f++IinS++ +P++L++++ mKIAA1743 133 S------------SADLPEHQGNLKMCCELAFCKIINSYCVFPRELKEVF 170 kqLrqaaekrFpsatqdvrykaVssFvFLRFfcPAIlSPklFnLvdehpd ++rq ++ r + +d++ +++s ++FLRF+cPAI+SP+lFnL++e+pd mKIAA1743 171 ASWRQECSSRGR---PDISERLISASLFLRFLCPAIMSPSLFNLLQEYPD 217 pttrRtLtLiAKvlQnLANlsesksklfgsKEpwmeplfkndflkqhkdr ++t+RtLtLiAKv QnLAN+++ fgsKE++m ++ n fl++++ + mKIAA1743 218 DRTARTLTLIAKVTQNLANFAK-----FGSKEEYMSFM--NQFLEHEWTN 260 vkdFLdelssvdepsesLvdkveelptkskPVstisgrelsllHslllen + +FL+e+s++++ s ++ ++e++ +++grels lHsll+e mKIAA1743 261 MQRFLLEISNPETLS---NTAGFEGY-------IDLGRELSSLHSLLWEA 300 gdalkrkknnnrDHKAlgedpldkllfklryfrltthkltngk<-* +l++ +kl + r +r++ l+ mKIAA1743 301 VSQLDQSVV-------------SKLGPLPRILRDVHTALSTPG 330 //