hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02378/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1743  ( 811 res)   mbg02378

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RasGAP   GTPase-activator protein for Ras-like GTPase   110.1    4.2e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RasGAP     1/1      65   237 ..     1   231 []   110.1  4.2e-29

Alignments of top-scoring domains:
RasGAP: domain 1 of 1, from 65 to 237: score 110.1, E = 4.2e-29
                   *->LvktllqkEIeSkaddpttlfRgNslaskmleqyfRrarGneYLrkt
                       ++ l   E++   d    +fR N+la+k++e+y +++ G++YL+ +
   mKIAA1743    65    FLTDLMMSEVDRCGDNEHLIFRENTLATKAIEEYLKLV-GQKYLQDA 110  

                   LrpvLkeIieskdWqHLscEiDPlkvykklVNqgelstsEldydlTnEev
                   L   +k   es +    +cE+DP+k                         
   mKIAA1743   111 LGEFIKALYESDE----NCEVDPSK------------------------- 131  

                   ldeeekseaieenlrnLlkyteklleaItsSsdefPpeLryIckclrq.s
                         s ++ e + nL    e  + +I++S   fP eL  ++   rq++
   mKIAA1743   132 ----CSSADLPEHQGNLKMCCELAFCKIINSYCVFPRELKEVFASWRQeC 177  

                   acekFPdnatVKEKKENKKSVVSqRFeqvilsavGgfvFLRFinPAIvsP
                    ++  Pd+                     + ++++  +FLRF +PAI sP
   mKIAA1743   178 SSRGRPDI---------------------SERLISASLFLRFLCPAIMSP 206  

                   dlfnIidkspsaqaTTDqrRtLtliAKviQslANg<-*
                    lfn++ + p++++    +RtLtliAKv Q+lAN    
   mKIAA1743   207 SLFNLLQEYPDDRT----ARTLTLIAKVTQNLANF    237  

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