hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm09324/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1740  ( 978 res)   mpm09324

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BROMO    bromo domain                                    45.2    8.7e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BROMO      1/1       1    73 [.     1   118 []    45.2  8.7e-09

Alignments of top-scoring domains:
BROMO: domain 1 of 1, from 1 to 73: score 45.2, E = 8.7e-09
                   *->spkqkklqellkallekldshgvpssrGrplawpFlepvdkkeLgvP
                                                                   +P
   mKIAA1740     1    ---------------------------------------------AP 2    

                   DYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepdse
                   +Yy+iIk PMD++ ++kkl++g Y + eeFv+D++ mf N+++YN+ +se
   mKIAA1740     3 NYYQIIKIPMDISSMEKKLNGGLYCNKEEFVNDMKTMFRNCRKYNGDSSE 52   

                   vykdAkkLeklfeeklkelpp<-*
                   + k++  Le+ f + +++++p   
   mKIAA1740    53 YTKMSDNLERCFHRAMTKHFP    73   

//