hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm09324/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1740  ( 978 res)   mpm09324

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Bromodomain Bromodomain                                  28.3    3.4e-05   1
Extensin_2  Extensin-like region                       -128.2       0.18   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Bromodomain   1/1       1    59 [.     1    92 []    28.3  3.4e-05
Extensin_2    1/1     218   553 ..     1   385 []  -128.2     0.18

Alignments of top-scoring domains:
Bromodomain: domain 1 of 1, from 1 to 59: score 28.3, E = 3.4e-05
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                                                      +P+YY+iIk PMD++
   mKIAA1740     1    --------------------------------APNYYQIIKIPMDIS 15   

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                    ++kkl+ g Y  + eeFv+D++ mf N+++YN++ se+ k++     
   mKIAA1740    16 SMEKKLNGGLY-CNKEEFVNDMKTMFRNCRKYNGDSSEYTKMSDN    59   

Extensin_2: domain 1 of 1, from 218 to 553: score -128.2, E = 0.18
                   *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy
                         + + l  ++ ps+    Y    PP p     ++    Ps +   
   mKIAA1740   218    SHVPSLQLGQMNCPSQDGNMY----PPAP-----FQAGFIPSRHGGT 255  

                   kSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpPkyvYkSPPpPv
                      PP    +  sS  PP  +y+S                y+Y     P 
   mKIAA1740   256 PARPPD---FPESSEIPPGHIYHS----------------YKYLNRAHPA 286  

                   .................ykYkSPPPPthsp......pPpyvykSPPPPpk
                     +++++++++++ +++ k    P P+h p++ ++     v   P PP +
   mKIAA1740   287 vwngnhgttnpgrlgpdEKPHLGPGPSHHPhtlghmMDGRVMRQPIPPNQ 336  

                   kyvykS.pPpptPvYkYkSPPPPpyvYkspPpPvkkripyvYkSPPPPpP
                     + +S  P   P   Y  PP  +  ++  PpP            P P+P
   mKIAA1740   337 WTKQSSfLPHGVPSSGYMQPPCKSAGHRLQPPPT-----------PAPSP 375  

                   YvYkSpPppvk.....kyiyksppppephkYvYkSPPPPpPYvyesvpeq
                     ++ p   +++ ++++ +  sp     ++   +  PP +P  y++    
   mKIAA1740   376 -RFRGPSQALRgaqggESMMDSPEMIAMQQLSSRVCPPGVP--YHPRQ-- 420  

                   kikYvYkSPPPPkksYkspsppkyVYkSpPpPvipykYkSPPPPkkkysp
                           P PP+     p p + V  S+   v      S P P    + 
   mKIAA1740   421 --------PTPPQ----LPGPFPQVAHSASVCV------SAPKPALDNPG 452  

                   aP....rkpyvYkSPPPPtyvYkSpPpPykpptppkiyksPPPPtPvyvY
                   + ++ ++ +     P  P + +      +     + + k  P P+P+   
   mKIAA1740   453 STqemtETHEPEEDPAEPLPGHEEKAA-SICSSEGVYLKQLPHPAPPLQA 501  

                   kspPpippiksssppPvyvYkSpPppvysPPPPyvYssPPPPvyvynsaP
                    +         ssp+      S  +   s                y+ + 
   mKIAA1740   502 SCTRQ------SSPQERETEDSQLKSDASDSAD-----------TYKTSK 534  

                   vykksPPkhhYiYsSPPPphh<-*
                      k   +   +YsSP        
   mKIAA1740   535 --NKNTWPLDNSYSSPAVQGC    553  

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