hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj00724/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1739  ( 755 res)   mtj00724

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PSI      domain found in Plexins, Semaphorins and Int    51.7    9.4e-11   1
IG       Immunoglobulin                                  30.7     0.0002   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/1     420   473 ..     1    56 []    51.7  9.4e-11
IG         1/1     484   568 ..     1    58 []    30.7   0.0002

Alignments of top-scoring domains:
PSI: domain 1 of 1, from 420 to 473: score 51.7, E = 9.4e-11
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg..erCderrgsrq
                      +C++y  + C +C+lardpy C+W ++++rC++ +++r ++  +++q
   mKIAA1739   420    DCTKY--RFCVDCVLARDPY-CAWNVNTSRCVATtsGRSGS--FLVQ 461  

                   nwssg.pssqCp<-*
                   ++ ++++s+ C    
   mKIAA1739   462 HVANLdTSKMCN    473  

IG: domain 1 of 1, from 484 to 568: score 30.7, E = 0.0002
                   *->pp.vtvkeGesvtLtC.as....titWy...................
                      p+++tv+ G +++L+C+ s++  + +W+ ++++ +  ++++   +++
   mKIAA1739   484    PKnITVVSGTDLVLPChLSsnlaHAHWTfgsqdlpaeqpgsflydtg 530  

                   ...LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                    + L++  ++  +s   G Y+C  +  +    + ++  + V    
   mKIAA1739   531 lqaLVVmAAQSRHS---GPYRCYSEeqGTRLAA-ESYLVAVV    568  

//