hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm06062/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1734  ( 1299 res)   mpm06062

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UBCc     Ubiquitin-conjugating enzyme E2, catalytic d    68.9    6.2e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UBCc       1/1     964  1121 ..     1   144 []    68.9  6.2e-16

Alignments of top-scoring domains:
UBCc: domain 1 of 1, from 964 to 1121: score 68.9, E = 6.2e-16
                   *->kRlqkElkelqkdpppgisaipvd.nlleWtvtIvGPpdTpYEgGvf
                      + ++kE++ l  + p+gi ++++++++  + ++I+GP  TpYE+G++
   mKIAA1734   964    STVRKEMALLATSLPDGIMVKTFEdRMDLFSALIKGPTRTPYEDGLY 1010 

                   kltieFPedYPfkPPkvkFitk...iyHPNvdsssGeiCLdILk......
                    ++i +P  YP  PP ++ ++  ++  +PN +  +G++C + L +  +++
   mKIAA1734  1011 LFDIQLPNIYPAVPPHFCYLSQcsgRLNPNLY-DNGKVCVSLLGtwigkg 1059 

                   .ekWsPaltletvLlsiqsLLnePnpdsPlnvdaaelyrk....dreefk
                   +e+W++  +l++vL+siq L    +p            ++++ +++  ++
   mKIAA1734  1060 tERWTSKSSLLQVLISIQGLILVNEPYYNEAGFDSDRGLQegyeNSRCYN 1109 

                   kkvrewtkkyae<-*
                   + +   + ++++   
   mKIAA1734  1110 EMALIRVVQSMT    1121 

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