hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm06062/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1734  ( 1299 res)   mpm06062

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UQ_con   Ubiquitin-conjugating enzyme                   102.8    6.8e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UQ_con     1/1     965  1114 ..     1   165 []   102.8  6.8e-27

Alignments of top-scoring domains:
UQ_con: domain 1 of 1, from 965 to 1114: score 102.8, E = 6.8e-27
                   *->RLqkElkelektelqkdpppgisagpvddpdgpnnlfeWevtIrGPe
                       ++kE +      l +  p+gi ++  +d     +++ + ++I GP 
   mKIAA1734   965    TVRKEMA-----LLATSLPDGIMVKTFED-----RMDLFSALIKGPT 1001 

                   gTpYeGGvFkldieFPedYPfkPPkvkFtT...kiyHPNVdsesGeiCLd
                    TpYe+G++ +di++P  YP  PP+  ++++ + +++PN +  +G +C++
   mKIAA1734  1002 RTPYEDGLYLFDIQLPNIYPAVPPHFCYLSqcsGRLNPNLY-DNGKVCVS 1050 

                   ILkPGDDpgYEaderd.d.evWsPaltvrsvLlsiqsLLL.sePyNpedP
                    L          ++ ++++e W+   ++ +vL+siq L L +ePy++e +
   mKIAA1734  1051 LLG---------TWIGkGtERWTSKSSLLQVLISIQGLILvNEPYYNEAG 1091 

                   lnaeaAklyken.reefkkrvreyv<-*
                    + + + +   ++ + +++++   +   
   mKIAA1734  1092 FDSDRGLQEGYEnSRCYNEMA--LI    1114 

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