hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtk/mtk00096/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1732  ( 704 res)   mtk00096

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
WW         WW domain                                     53.1    6.1e-12   1
Extensin_2 Extensin-like region                        -146.0       0.91   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
WW           1/1     531   560 ..     1    30 []    53.1  6.1e-12
Extensin_2   1/1     264   609 ..     1   385 []  -146.0     0.91

Alignments of top-scoring domains:
WW: domain 1 of 1, from 531 to 560: score 53.1, E = 6.1e-12
                   *->LppgWeerkdpdGrpYYyNhnTktTqWekP<-*
                      Lpp+W+ + dp+G++YYy+ +T++TqW++P   
   mKIAA1732   531    LPPNWKTARDPEGKIYYYHVITRQTQWDPP    560  

Extensin_2: domain 1 of 1, from 264 to 609: score -146.0, E = 0.91
                   *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy
                      l    va    +   +   +    SP P      Y     P   y  
   mKIAA1732   264    LFEQEVAQREAQKQQQQMQNLGMTSPLPF-DSLGYNASHHPFAGY-- 307  

                   kSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpPkyvYkSPPpPv
                      PP  +   Y  P  P   +   P P+     SP p  y    P    
   mKIAA1732   308 ---PPGYPMQAYVDPSNPNAGKVLLPTPSMDPVCSPAP--YDHAQPLVGH 352  

                   ykYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpptPvYkYkSPPPPp
                      +   PP+           P  P    v  S+   +  Y+ +     +
   mKIAA1732   353 STESLAAPPS----------VPVVPH---VAASVEVSSSQYVAQNE---S 386  

                   yvYkspPpPvkkripyvYkSPPPPpP..Y.vYkSpPppvkkyiykspppp
                    v++ +  Pv +      + P P   ++Y+v+ S    v     + +p+ 
   mKIAA1732   387 VVHQDSNVPVMP-----VQAPGPVQGqnYnVWESNQQSV-SVQQQYSPAQ 430  

                   ephkYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkksYkspsppkyVY
                   ++    Y+     + Y   s+  q  + + +S   P+  Y      + ++
   mKIAA1732   431 SQTTIYYQGQTCSTVYSVTSPYSQTTPPIVQSYAQPSLQYI---QGQQIF 477  

                   kSpPpPvipykYkSPPPPkkkyspaPrkpyvYkSPPPPtyvYkSpPpPyk
                      P  v   + +  P        aP +p             +S  pP+ 
   mKIAA1732   478 TAHPQGV---VVQ--PTAAVTSIVAPGQP-------------QSLQPPE- 508  

                   pptppkiyksPPPPtPvyvYkspPpippiksssppPvyvYkSpPppvysP
                         +   PPP  P ++    Pp       +    y+Y    +  +  
   mKIAA1732   509 MVVTNNLLDLPPPSPPKPKTIVLPPNWKTARDPEGKIYYYHVITRQTQWD 558  

                   PPPyvYssPPPPvy............vynsaPvykksPPkhhYiYsSPPP
                   PP   ++sP   +  +++ + + +++ y+  P+  +  Pk     +S   
   mKIAA1732   559 PPT--WESPGDDASleheaemdlgtpTYDENPMKTSKKPKTAEADTSSEL 606  

                   phh<-*
                         
   mKIAA1732   607 AKK    609  

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