hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf02083/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1729  ( 976 res)   mpf02083

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     55.6    6.3e-12   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/4      32    54 ..     1    23 []    19.3     0.53
ZnF_C2H2   2/4      59    81 ..     1    23 []    23.1    0.038
ZnF_C2H2   3/4      87   110 ..     1    23 []    20.3     0.27
ZnF_C2H2   4/4     938   960 ..     1    23 []    11.1       18

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 4, from 32 to 54: score 19.3, E = 0.53
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ C +s++++ ++++H  +H   
   mKIAA1729    32    YYCDK-CRFSTKDPlQYRKHTLQH    54   

ZnF_C2H2: domain 2 of 4, from 59 to 81: score 23.1, E = 0.038
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ C++   +k++++rH+ +H   
   mKIAA1729    59    FICSH-CSYISYTKgEFQRHLVKH    81   

ZnF_C2H2: domain 3 of 4, from 87 to 110: score 20.3, E = 0.27
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C++ C++   + +  ++H r+vH   
   mKIAA1729    87    YRCEY-CDYGAIRNdYIVKHRRrVH    110  

ZnF_C2H2: domain 4 of 4, from 938 to 960: score 11.1, E = 18
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC + Cg+ + ++++   H ++H   
   mKIAA1729   938    FKCWF-CGRLYEDQeEWMSHGQRH    960  

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