hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf02083/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1729  ( 976 res)   mpf02083

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          50.5    3.7e-11   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/4      32    54 ..     1    24 []    13.9      3.8
zf-C2H2    2/4      59    81 ..     1    24 []    17.6     0.29
zf-C2H2    3/4      87   110 ..     1    24 []    19.5    0.081
zf-C2H2    4/4     938   960 ..     1    24 []    17.2     0.39

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 4, from 32 to 54: score 13.9, E = 3.8
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +C  s +++ ++++H   H   
   mKIAA1729    32    YYCD-KCRFSTKDPLQYRKHTLQH    54   

zf-C2H2: domain 2 of 4, from 59 to 81: score 17.6, E = 0.29
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +C +   +k++++rHl +H   
   mKIAA1729    59    FICS-HCSYISYTKGEFQRHLVKH    81   

zf-C2H2: domain 3 of 4, from 87 to 110: score 19.5, E = 0.081
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C+ +C++   r++   +H+r+ H   
   mKIAA1729    87    YRCE-YCDYGAIRNDYIVKHRRRvH    110  

zf-C2H2: domain 4 of 4, from 938 to 960: score 17.2, E = 0.39
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC   Cg+ + ++++  +H ++H   
   mKIAA1729   938    FKCW-FCGRLYEDQEEWMSHGQRH    960  

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