hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg03474/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1728 ( 1313 res) mbg03474 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ANK ankyrin repeats 174.7 8.8e-48 10 TPR Tetratricopeptide repeats 39.7 3.8e-07 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ANK 1/10 350 382 .. 1 30 [] 3.0 1.9e+03 ANK 2/10 386 417 .. 1 30 [] 0.3 4.3e+03 ANK 3/10 421 450 .. 1 30 [] 27.4 0.002 ANK 4/10 494 523 .. 1 30 [] 1.3 3.1e+03 ANK 5/10 532 561 .. 1 30 [] 19.7 0.42 ANK 6/10 565 594 .. 1 30 [] 29.0 0.00066 ANK 7/10 598 627 .. 1 30 [] 30.3 0.00027 ANK 8/10 631 660 .. 1 30 [] 28.6 0.00088 ANK 9/10 664 693 .. 1 30 [] 29.3 0.00054 ANK 10/10 697 726 .. 1 30 [] 8.4 3.5e+02 TPR 1/3 743 776 .. 1 34 [] 5.2 1.3e+02 TPR 2/3 790 823 .. 1 34 [] 19.1 0.62 TPR 3/3 824 857 .. 1 34 [] 21.0 0.17 Alignments of top-scoring domains: ANK: domain 1 of 10, from 350 to 382: score 3.0, E = 1.9e+03 *->dGrTpLHlAaen...gnlevvklLldkgadina<-* +G ++ +n + n++v +lL+ ga++n+ mKIAA1728 350 EGLSAALASLRNlytPNVKVSRLLILGGANVNY 382 ANK: domain 2 of 10, from 386 to 417: score 0.3, E = 4.3e+03 *->dGrTpLHlAaen..gnlevvklLldkgadina<-* +++ l+++++ g++evv lLl+ ga ++ mKIAA1728 386 VLNNAPILCVQShlGHEEVVTLLLEFGACLDG 417 ANK: domain 3 of 10, from 421 to 450: score 27.4, E = 0.002 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+++L +Aa+ g++++v lL++kga ++ mKIAA1728 421 NGMNALCYAAAAGHMKLVCLLIKKGARVDH 450 ANK: domain 4 of 10, from 494 to 523: score 1.3, E = 3.1e+03 *->dGrTpLHlAaengnlevvklLldkgadina<-* + +L Aa+ g+ +vv+ Ll + ++ mKIAA1728 494 ALQQALTAAASMGHSSVVQSLLGMAEEHEI 523 ANK: domain 5 of 10, from 532 to 561: score 19.7, E = 0.42 *->dGrTpLHlAaengnlevvklLldkgadina<-* G T+L Aa +g +e+++lLl++ga + mKIAA1728 532 WGETALTAAAGRGKVEICELLLERGAAVSR 561 ANK: domain 6 of 10, from 565 to 594: score 29.0, E = 0.00066 *->dGrTpLHlAaengnlevvklLldkgadina<-* G pL +Aa+ g+ vv+lLld+g d+n+ mKIAA1728 565 RGVPPLFCAARQGHWQVVRLLLDRGCDVNL 594 ANK: domain 7 of 10, from 598 to 627: score 30.3, E = 0.00027 *->dGrTpLHlAaengnlevvklLldkgadina<-* +GrTpL++A ++g+l++v++Ll+kga + mKIAA1728 598 QGRTPLMVASCEGHLSTVEFLLSKGAALSS 627 ANK: domain 8 of 10, from 631 to 660: score 28.6, E = 0.00088 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G ++L +A+ +g+ vv++L+++ga+i+ mKIAA1728 631 EGLSALSWACLKGHRAVVQYLVEEGAEIDQ 660 ANK: domain 9 of 10, from 664 to 693: score 29.3, E = 0.00054 *->dGrTpLHlAaengnlevvklLldkgadina<-* +GrTpL lAa +g+ e+v +L++kga i+ mKIAA1728 664 NGRTPLDLAAFYGDAETVLYLVEKGAVIEH 693 ANK: domain 10 of 10, from 697 to 726: score 8.4, E = 3.5e+02 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+ pL A+ n vv Ll+kga + mKIAA1728 697 SGMRPLDRAIGCRNTAVVVTLLRKGAKLGN 726 [output cut off at A = 10 top alignments] //