hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file: /cdna4/rodent/full/goal/mbg/mbg03474/w3open/interpro/cnk_1/seq.in
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Query: mKIAA1728 ( 1313 res) mbg03474
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ANK ankyrin repeats 174.7 8.8e-48 10
TPR Tetratricopeptide repeats 39.7 3.8e-07 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ANK 1/10 350 382 .. 1 30 [] 3.0 1.9e+03
ANK 2/10 386 417 .. 1 30 [] 0.3 4.3e+03
ANK 3/10 421 450 .. 1 30 [] 27.4 0.002
ANK 4/10 494 523 .. 1 30 [] 1.3 3.1e+03
ANK 5/10 532 561 .. 1 30 [] 19.7 0.42
ANK 6/10 565 594 .. 1 30 [] 29.0 0.00066
ANK 7/10 598 627 .. 1 30 [] 30.3 0.00027
ANK 8/10 631 660 .. 1 30 [] 28.6 0.00088
ANK 9/10 664 693 .. 1 30 [] 29.3 0.00054
ANK 10/10 697 726 .. 1 30 [] 8.4 3.5e+02
TPR 1/3 743 776 .. 1 34 [] 5.2 1.3e+02
TPR 2/3 790 823 .. 1 34 [] 19.1 0.62
TPR 3/3 824 857 .. 1 34 [] 21.0 0.17
Alignments of top-scoring domains:
ANK: domain 1 of 10, from 350 to 382: score 3.0, E = 1.9e+03
*->dGrTpLHlAaen...gnlevvklLldkgadina<-*
+G ++ +n + n++v +lL+ ga++n+
mKIAA1728 350 EGLSAALASLRNlytPNVKVSRLLILGGANVNY 382
ANK: domain 2 of 10, from 386 to 417: score 0.3, E = 4.3e+03
*->dGrTpLHlAaen..gnlevvklLldkgadina<-*
+++ l+++++ g++evv lLl+ ga ++
mKIAA1728 386 VLNNAPILCVQShlGHEEVVTLLLEFGACLDG 417
ANK: domain 3 of 10, from 421 to 450: score 27.4, E = 0.002
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+G+++L +Aa+ g++++v lL++kga ++
mKIAA1728 421 NGMNALCYAAAAGHMKLVCLLIKKGARVDH 450
ANK: domain 4 of 10, from 494 to 523: score 1.3, E = 3.1e+03
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+ +L Aa+ g+ +vv+ Ll + ++
mKIAA1728 494 ALQQALTAAASMGHSSVVQSLLGMAEEHEI 523
ANK: domain 5 of 10, from 532 to 561: score 19.7, E = 0.42
*->dGrTpLHlAaengnlevvklLldkgadina<-*
G T+L Aa +g +e+++lLl++ga +
mKIAA1728 532 WGETALTAAAGRGKVEICELLLERGAAVSR 561
ANK: domain 6 of 10, from 565 to 594: score 29.0, E = 0.00066
*->dGrTpLHlAaengnlevvklLldkgadina<-*
G pL +Aa+ g+ vv+lLld+g d+n+
mKIAA1728 565 RGVPPLFCAARQGHWQVVRLLLDRGCDVNL 594
ANK: domain 7 of 10, from 598 to 627: score 30.3, E = 0.00027
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+GrTpL++A ++g+l++v++Ll+kga +
mKIAA1728 598 QGRTPLMVASCEGHLSTVEFLLSKGAALSS 627
ANK: domain 8 of 10, from 631 to 660: score 28.6, E = 0.00088
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+G ++L +A+ +g+ vv++L+++ga+i+
mKIAA1728 631 EGLSALSWACLKGHRAVVQYLVEEGAEIDQ 660
ANK: domain 9 of 10, from 664 to 693: score 29.3, E = 0.00054
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+GrTpL lAa +g+ e+v +L++kga i+
mKIAA1728 664 NGRTPLDLAAFYGDAETVLYLVEKGAVIEH 693
ANK: domain 10 of 10, from 697 to 726: score 8.4, E = 3.5e+02
*->dGrTpLHlAaengnlevvklLldkgadina<-*
G+ pL A+ n vv Ll+kga +
mKIAA1728 697 SGMRPLDRAIGCRNTAVVVTLLRKGAKLGN 726
[output cut off at A = 10 top alignments]
//