hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg03474/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1728 ( 1313 res) mbg03474 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Ank Ankyrin repeat 213.7 2.7e-60 11 TPR_2 Tetratricopeptide repeat 52.1 1.2e-11 3 TPR_1 Tetratricopeptide repeat 32.9 7.2e-06 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Ank 1/11 350 385 .. 1 33 [] 7.7 15 Ank 2/11 388 420 .. 1 33 [] 3.0 75 Ank 3/11 421 453 .. 1 33 [] 30.3 4.3e-05 Ank 4/11 454 488 .. 1 33 [] 4.1 52 Ank 5/11 494 530 .. 1 33 [] 3.0 75 Ank 6/11 532 564 .. 1 33 [] 27.3 0.00036 Ank 7/11 565 597 .. 1 33 [] 34.7 2.1e-06 Ank 8/11 598 630 .. 1 33 [] 38.9 1.1e-07 Ank 9/11 631 663 .. 1 33 [] 31.2 2.3e-05 Ank 10/11 664 696 .. 1 33 [] 33.0 6.7e-06 Ank 11/11 697 729 .. 1 33 [] 9.7 8 TPR_1 1/3 743 776 .. 1 34 [] 0.2 34 TPR_2 1/3 743 776 .. 1 34 [] 15.6 1.1 TPR_1 2/3 790 823 .. 1 34 [] 15.7 0.49 TPR_2 2/3 790 823 .. 1 34 [] 18.5 0.16 TPR_1 3/3 824 857 .. 1 34 [] 23.0 0.007 TPR_2 3/3 824 857 .. 1 34 [] 24.6 0.0023 Alignments of top-scoring domains: Ank: domain 1 of 11, from 350 to 385: score 7.7, E = 15 *->dGfTPLHlAalrg....nlevvklLlsqGAdlnaqdd<-* +G ++ lA+lr+ +n++v +lL+ GA++n ++ mKIAA1728 350 EGLSA-ALASLRNlytpNVKVSRLLILGGANVNYRTE 385 Ank: domain 2 of 11, from 388 to 420: score 3.0, E = 75 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + L + ++ g++evv+lLl+ GA+l+ mKIAA1728 388 NNAPILCVQSHLGHEEVVTLLLEFGACLDGMSE 420 Ank: domain 3 of 11, from 421 to 453: score 30.3, E = 4.3e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+ +L +Aa g++++v lL+++GA +++ d+ mKIAA1728 421 NGMNALCYAAAAGHMKLVCLLIKKGARVDHLDK 453 Ank: domain 4 of 11, from 454 to 488: score 4.1, E = 52 *->dGfTPLHlAalrgnlevvklLls..qGAdlnaqdd<-* G+ +L + alrg+ +++++Ll+ + A + mKIAA1728 454 KGQCALVHSALRGHSDILQYLLNceWSAGPPQPGT 488 Ank: domain 5 of 11, from 494 to 530: score 3.0, E = 75 *->dGfTPLHlAalrgnlevvklLls....qGAdlnaqdd<-* + +L Aa++g+ +vv+ Ll+ +++ ++n +d mKIAA1728 494 ALQQALTAAASMGHSSVVQSLLGmaeeHEIEVNGTDT 530 Ank: domain 6 of 11, from 532 to 564: score 27.3, E = 0.00036 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L Aa rg +e+++lLl++GA + ++ mKIAA1728 532 WGETALTAAAGRGKVEICELLLERGAAVSRANR 564 Ank: domain 7 of 11, from 565 to 597: score 34.7, E = 2.1e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G PL +Aa+ g+ +vv+lLl++G+d+n+ d+ mKIAA1728 565 RGVPPLFCAARQGHWQVVRLLLDRGCDVNLSDK 597 Ank: domain 8 of 11, from 598 to 630: score 38.9, E = 1.1e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPL++A++ g+l+ v++Lls+GA l d+ mKIAA1728 598 QGRTPLMVASCEGHLSTVEFLLSKGAALSSLDK 630 Ank: domain 9 of 11, from 631 to 663: score 31.2, E = 2.3e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G ++L +A+l+g+ vv++L++ GA+++ +d+ mKIAA1728 631 EGLSALSWACLKGHRAVVQYLVEEGAEIDQTDK 663 Ank: domain 10 of 11, from 664 to 696: score 33.0, E = 6.7e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL lAa++g++e v +L+++GA + ++d mKIAA1728 664 NGRTPLDLAAFYGDAETVLYLVEKGAVIEHVDH 696 Ank: domain 11 of 11, from 697 to 729: score 9.7, E = 8 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PL A+ + n+ vv Ll +GA l mKIAA1728 697 SGMRPLDRAIGCRNTAVVVTLLRKGAKLGNAAW 729 TPR_1: domain 1 of 3, from 743 to 776: score 0.2, E = 34 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + + Gn+ +k+gk +eA + y+ AL+ P mKIAA1728 743 LQKLVEEGNVMYKKGKMKEAAQRYQYALRKFPRE 776 TPR_2: domain 1 of 3, from 743 to 776: score 15.6, E = 1.1 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* l G++ yk+g+ +eA++ y+ Al+ +P+ mKIAA1728 743 LQKLVEEGNVMYKKGKMKEAAQRYQYALRKFPRE 776 TPR_1: domain 2 of 3, from 790 to 823: score 15.7, E = 0.49 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + y nl + +k +++ A+e+ kALel P+ mKIAA1728 790 VSLYLNLSRCRRKTNDFGLAEEFASKALELKPKS 823 TPR_2: domain 2 of 3, from 790 to 823: score 18.5, E = 0.16 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* + ++ nl ++ +k +d+ A+e+ kAlel P+ mKIAA1728 790 VSLYLNLSRCRRKTNDFGLAEEFASKALELKPKS 823 TPR_1: domain 3 of 3, from 824 to 857: score 23.0, E = 0.007 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +ea+y ++ a ++ ++ +A++++++A++l Pnn mKIAA1728 824 YEAFYARARAKRNSRQFLAALADLQEAVKLCPNN 857 TPR_2: domain 3 of 3, from 824 to 857: score 24.6, E = 0.0023 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ea y++++a ++ +++ Al+++++A++l Pnn mKIAA1728 824 YEAFYARARAKRNSRQFLAALADLQEAVKLCPNN 857 //