hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbh/mbh01547/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1727 ( 1159 res) mbh01547 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- FH2 Formin Homology 2 Domain 204.6 9.2e-57 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- FH2 1/1 98 548 .. 1 499 [] 204.6 9.2e-57 Alignments of top-scoring domains: FH2: domain 1 of 1, from 98 to 548: score 204.6, E = 9.2e-57 *->pkkepkpkkkLKqLhWdklnslrssrqApsNPseise..gtvWettv ++ kk++++++W+ + P e++++++ +W t mKIAA1727 98 GYSSLGKKKRMRSFFWKTI------------PEEQVRgkTNIW--TL 130 ndkldeekfLynnldldeleelFaakektkkakkrsvsekksk.lkkkkv + + ++ + d + +eelF+ +e t ka+ +++ ++ +++ mKIAA1727 131 -AAKQQHQY---QIDKKTIEELFGQQEDTSKASL--PKRGGALnSSFRDA 174 qqnlkilDpkrsqnpplaIllrslhcklsfeetvikeailevDedvlsvd ++++++lD+krs n ++I+l+ + k s + i+e i+++ ++ + + mKIAA1727 175 REEVTVLDAKRSMN--IGIFLKQF--KKSPQS--IVEDIYQGKSEHYGSE 218 lleqLlkfaPYsktkeelkklreykeddekspeeLaraeqiFlllisnLi +l lk++P + ee+kkl+ +++d +++L+ a+ Fl+++ + + mKIAA1727 219 TLREILKLLP---ESEEVKKLKAFNGD----VSKLSLADS-FLHCLIQ-V 259 pyleeRlnallfkanFeeevedLkpklekveaAceeLreSkkFrklLeli p ++ R++a+ k F + L ++++++ aA++eL+ + + +L l+ mKIAA1727 260 PNYSLRIEAMVLKKEFLPSCSSLFKDIRTLRAATKELMLCEELHSILHLV 309 LaiGNyMNagsrrrrGqAqGFkLssLlkLsdvKsadnktTLLHflvkiir L++GN+MNag + G+A GFkLssLlkL+d+K + +++LLHf++++ mKIAA1727 310 LQAGNIMNAGGYA--GNAVGFKLSSLLKLADTKANKPGMNLLHFVAQEAQ 357 kkypdllkFysdlhhvdkaskvnleqlekdvkqlerqiknlEldkggLsd k+ + ll+F + l hv + s+++l+ e+++++l + + L+ mKIAA1727 358 KQDAILLNFSEKLQHVQETSRLSLDITEAELHSLFVR-------TKSLQE 400 peghpddkflevmtpFlkaAkekyekLqkdlrdlktrfeklveyygedpk +++ +++++ m+ Fl+ A ek+++L+ r+l+ + + l +++ed mKIAA1727 401 NIQLD-QELCQQMEDFLQFAVEKLAELELWKRELQGEAHTLIDFFCEDKE 449 drdvspeeFFkdfneFlkeFkkaaeenlaiEskrkeeEeeerrakqlalr + + +e F+ f++F ++F+ka+++n + +eE+e+++ +++ mKIAA1727 450 T--MKLDECFQIFRDFCTRFNKAVKDN------HDREEQERKQLQRQK-- 489 vketteyeqssskqkene.errvernplmdfev...erdflgvlds...l ++ + +++ s ++e + r + + ++++++++ +d +l+++++ mKIAA1727 490 -EMEQKRYSWS--TGELGsFGRSSSENDVQMLAktgTEDLPSFLKPrpnS 536 lkelrtdssfer<-* +++ + ++ r mKIAA1727 537 PSYRPPNTRRSR 548 //