hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00741/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1717  ( 384 res)   mpg00741

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SET      SET domain                                      59.8    5.9e-14   1
MORN     MORN repeat                                     49.9    5.6e-11   3
MORN_2   MORN repeat variant                             17.5       0.33   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MORN       1/3      54    76 ..     1    23 []    25.7    0.001
MORN_2     1/3      63    83 ..     1    22 []     5.6  1.5e+02
MORN       2/3      77    99 ..     1    23 []    18.9    0.085
MORN_2     2/3      86   106 ..     1    22 []     2.1  5.7e+02
MORN_2     3/3     109   130 ..     1    22 []    15.7      1.1
MORN       3/3     124   146 ..     1    23 []    17.9     0.12
SET        1/1     230   361 ..     1   261 []    59.8  5.9e-14

Alignments of top-scoring domains:
MORN: domain 1 of 3, from 54 to 76: score 25.7, E = 0.001
                   *->YeGewknGkrhGkGvytwadGdr<-*
                      +eG++++G+++G+G++ + dG++   
   mKIAA1717    54    FEGNFVHGEKNGRGKFFFFDGST    76   

MORN_2: domain 1 of 3, from 63 to 83: score 5.6, E = 1.5e+02
                   *->keGeekfyypnGklkeegnykn<-*
                      k+G+ kf++ +G  + eg+y++   
   mKIAA1717    63    KNGRGKFFFFDGSTL-EGYYVD    83   

MORN: domain 2 of 3, from 77 to 99: score 18.9, E = 0.085
                   *->YeGewknGkrhGkGvytwadGdr<-*
                       eG ++++  +G+Gvyt+ dG++   
   mKIAA1717    77    LEGYYVDDALQGQGVYTYEDGGV    99   

MORN_2: domain 2 of 3, from 86 to 106: score 2.1, E = 5.7e+02
                   *->keGeekfyypnGklkeegnykn<-*
                      ++G   + y++G ++ +g+y++   
   mKIAA1717    86    LQGQGVYTYEDGGVL-QGTYVD    106  

MORN_2: domain 3 of 3, from 109 to 130: score 15.7, E = 1.1
                   *->keGeekfyypnGklkeegnykn<-*
                      ++G +++y+ +G l+ +g+yk+   
   mKIAA1717   109    LNGPAQEYDSDGRLIFKGQYKD    130  

MORN: domain 3 of 3, from 124 to 146: score 17.9, E = 0.12
                   *->YeGewknGkrhGkGvytwadGdr<-*
                      + G++k++ rhG    +++dG++   
   mKIAA1717   124    FKGQYKDNNRHGVCWIHYPDGGS    146  

SET: domain 1 of 1, from 230 to 361: score 59.8, E = 5.9e-14
                   *->vqkgrwarlegfktegkGwGlratedIpkGefiiEYpGelitseeae
                      +  + +++  ++ +   G Gl++++ + ++++   Y+G  it++e++
   mKIAA1717   230    ESERVYVADSLISSA--GEGLFSKVAVGPNTVMSFYNGVRITHQEVD 274  

                   kreddllgpkyydddgdksldeYlfdldalfLlrEkleSWkpYiiLPtys
                    r+        ++ +g +        ld+                     
   mKIAA1717   275 SRD--------WALNGNT----L--SLDE--------------------- 289  

                   PlfWseeeleLkGTqllevdkeeleeydllaeeievflqhklFpdveeef
                                                                     
   mKIAA1717     - -------------------------------------------------- -    

                   sfedflWaasivsSRafslvegvnreeensegslelviDAt.rkGNiaRF
                                                     e viD ++ +  ++ +
   mKIAA1717   290 ----------------------------------ETVIDVPePYNHVSKY 305  

                   i.......NHSCePNcevqvvfvdgedlgdsdvtDeaglepgdpri....
                   + + +++ NHS +PNc   v+                     +pr+++ +
   mKIAA1717   306 CaslghkaNHSFTPNC---VYDLF-----------------VHPRFgpik 335  

                   vlfAlrdIpaGeELtydYgydksnge<-*
                   ++++lr ++a eELt+ Ygyd+s++    
   mKIAA1717   336 CIRTLRAVEAEEELTVAYGYDHSPPG    361  

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