hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00321/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1716  ( 277 res)   mbj00321

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                  56.7    5.1e-13   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/2     144   176 ..     1    33 []    35.8  9.7e-07
Ank        2/2     177   209 ..     1    33 []    20.9    0.031

Alignments of top-scoring domains:
Ank: domain 1 of 2, from 144 to 176: score 35.8, E = 9.7e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G TPL  A+l g+l v+++Ll++GAd+n +d    
   mKIAA1716   144    EGKTPLVQAVLGGSLIVCEFLLQNGADVNQRDS    176  

Ank: domain 2 of 2, from 177 to 209: score 20.9, E = 0.031
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+ PLH+A l g++  v l+l++GAd +a d    
   mKIAA1716   177    LGRAPLHHATLLGRTGQVCLFLKRGADQHALDQ    209  

//