hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg19468/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1710  ( 461 res)   mbg19468

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    257.0    1.5e-72  12
KRAB     krueppel associated box                         86.6    2.9e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1       5    66 ..     1    62 []    86.6  2.9e-21
ZnF_C2H2   1/12    129   151 ..     1    23 []    28.8  0.00074
ZnF_C2H2   2/12    157   179 ..     1    23 []    25.7   0.0064
ZnF_C2H2   3/12    185   207 ..     1    23 []    26.2   0.0045
ZnF_C2H2   4/12    213   235 ..     1    23 []    25.0     0.01
ZnF_C2H2   5/12    241   263 ..     1    23 []    30.3  0.00027
ZnF_C2H2   6/12    269   291 ..     1    23 []    29.3  0.00055
ZnF_C2H2   7/12    297   319 ..     1    23 []    27.9   0.0014
ZnF_C2H2   8/12    325   347 ..     1    23 []    25.1   0.0097
ZnF_C2H2   9/12    353   375 ..     1    23 []    28.1   0.0012
ZnF_C2H2  10/12    381   403 ..     1    23 []    27.0   0.0026
ZnF_C2H2  11/12    409   431 ..     1    23 []    26.8   0.0031
ZnF_C2H2  12/12    437   459 ..     1    23 []    30.9  0.00017

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 5 to 66: score 86.6, E = 2.9e-21
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      VtFeD+A+++++EEW+ LDp+Qr+LYRdVM+ENY+n+vSL+ f++  
   mKIAA1710     5    VTFEDMAMYLTREEWRPLDPTQRDLYRDVMQENYGNVVSLD-FEIRS 50   

                   p.dliskLEqgeEpwi<-*
                    ++  +k+E  +  +    
   mKIAA1710    51 EnEANPKQEFSDDVEF    66   

ZnF_C2H2: domain 1 of 12, from 129 to 151: score 28.8, E = 0.00074
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgk fs+ ++L+rH+++H   
   mKIAA1710   129    HICSQ-CGKAFSQIsDLNRHQKTH    151  

ZnF_C2H2: domain 2 of 12, from 157 to 179: score 25.7, E = 0.0064
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC + Cgk fs+ ++L++H+r+H   
   mKIAA1710   157    YKCYE-CGKGFSRSsHLIQHQRTH    179  

ZnF_C2H2: domain 3 of 12, from 185 to 207: score 26.2, E = 0.0045
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgksf + ++L++H+ +H   
   mKIAA1710   185    YDCNE-CGKSFGRSsHLIQHQTIH    207  

ZnF_C2H2: domain 4 of 12, from 213 to 235: score 25.0, E = 0.01
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgksf++ ++L++H+r+H   
   mKIAA1710   213    HKCTE-CGKSFCRLsHLIQHQRTH    235  

ZnF_C2H2: domain 5 of 12, from 241 to 263: score 30.3, E = 0.00027
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgksfs+ ++L +H+r+H   
   mKIAA1710   241    YECEE-CGKSFSRSsHLAQHQRTH    263  

ZnF_C2H2: domain 6 of 12, from 269 to 291: score 29.3, E = 0.00055
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ fs +++L++H+rvH   
   mKIAA1710   269    YECHE-CGRGFSERsDLIKHYRVH    291  

ZnF_C2H2: domain 7 of 12, from 297 to 319: score 27.9, E = 0.0014
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk fs+ ++L+rH r H   
   mKIAA1710   297    YKCDE-CGKNFSQNsDLVRHRRAH    319  

ZnF_C2H2: domain 8 of 12, from 325 to 347: score 25.1, E = 0.0097
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ fs+ ++L++H+r+H   
   mKIAA1710   325    YHCNE-CGENFSRIsHLVQHQRTH    347  

ZnF_C2H2: domain 9 of 12, from 353 to 375: score 28.1, E = 0.0012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgksfs+ ++L+ H+++H   
   mKIAA1710   353    YECTA-CGKSFSRSsHLITHQKIH    375  

	[output cut off at A = 10 top alignments]
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