hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg19468/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1710 ( 461 res) mbg19468 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 343.8 1.9e-99 12 KRAB KRAB box 92.9 6.6e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- KRAB 1/1 5 45 .. 1 41 [] 92.9 6.6e-24 zf-C2H2 1/12 129 151 .. 1 24 [] 34.8 2e-06 zf-C2H2 2/12 157 179 .. 1 24 [] 36.6 5.7e-07 zf-C2H2 3/12 185 207 .. 1 24 [] 33.0 6.7e-06 zf-C2H2 4/12 213 235 .. 1 24 [] 32.4 1.1e-05 zf-C2H2 5/12 241 263 .. 1 24 [] 41.1 2.6e-08 zf-C2H2 6/12 269 291 .. 1 24 [] 33.6 4.6e-06 zf-C2H2 7/12 297 319 .. 1 24 [] 36.8 5e-07 zf-C2H2 8/12 325 347 .. 1 24 [] 30.8 3.1e-05 zf-C2H2 9/12 353 375 .. 1 24 [] 36.2 7.4e-07 zf-C2H2 10/12 381 403 .. 1 24 [] 32.0 1.3e-05 zf-C2H2 11/12 409 431 .. 1 24 [] 36.3 7.1e-07 zf-C2H2 12/12 437 459 .. 1 24 [] 37.8 2.5e-07 Alignments of top-scoring domains: KRAB: domain 1 of 1, from 5 to 45: score 92.9, E = 6.6e-24 *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-* VtFeD A+++t+EEW+ Ldp+Qr+LYrdVM+ENy+n+vSl+ mKIAA1710 5 VTFEDMAMYLTREEWRPLDPTQRDLYRDVMQENYGNVVSLD 45 zf-C2H2: domain 1 of 12, from 129 to 151: score 34.8, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+Fs+ s+L+rH++tH mKIAA1710 129 HICS-QCGKAFSQISDLNRHQKTH 151 zf-C2H2: domain 2 of 12, from 157 to 179: score 36.6, E = 5.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk Fsr+s+L +H+rtH mKIAA1710 157 YKCY-ECGKGFSRSSHLIQHQRTH 179 zf-C2H2: domain 3 of 12, from 185 to 207: score 33.0, E = 6.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksF r+s+L +H+ +H mKIAA1710 185 YDCN-ECGKSFGRSSHLIQHQTIH 207 zf-C2H2: domain 4 of 12, from 213 to 235: score 32.4, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF+r s+L +H+rtH mKIAA1710 213 HKCT-ECGKSFCRLSHLIQHQRTH 235 zf-C2H2: domain 5 of 12, from 241 to 263: score 41.1, E = 2.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFsr+s+L +H+rtH mKIAA1710 241 YECE-ECGKSFSRSSHLAQHQRTH 263 zf-C2H2: domain 6 of 12, from 269 to 291: score 33.6, E = 4.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+ Fs +s+L +H r+H mKIAA1710 269 YECH-ECGRGFSERSDLIKHYRVH 291 zf-C2H2: domain 7 of 12, from 297 to 319: score 36.8, E = 5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs++s+L rH+r H mKIAA1710 297 YKCD-ECGKNFSQNSDLVRHRRAH 319 zf-C2H2: domain 8 of 12, from 325 to 347: score 30.8, E = 3.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg+ Fsr s+L +H+rtH mKIAA1710 325 YHCN-ECGENFSRISHLVQHQRTH 347 zf-C2H2: domain 9 of 12, from 353 to 375: score 36.2, E = 7.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ CgksFsr+s+L +H+++H mKIAA1710 353 YECT-ACGKSFSRSSHLITHQKIH 375 zf-C2H2: domain 10 of 12, from 381 to 403: score 32.0, E = 1.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C +sF +s+L +H+rtH mKIAA1710 381 YECN-ECWRSFGERSDLIKHQRTH 403 zf-C2H2: domain 11 of 12, from 409 to 431: score 36.3, E = 7.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk F+++snL +H+r+H mKIAA1710 409 YECV-QCGKGFTQSSNLITHQRVH 431 zf-C2H2: domain 12 of 12, from 437 to 459: score 37.8, E = 2.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+ksFsr+s L +H+r+H mKIAA1710 437 YECT-ECDKSFSRSSALIKHKRVH 459 //