hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg16135/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1708  ( 1291 res)   mbg16135

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   181.3    9.5e-50   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7     953   990 ..     1    46 []    40.6  2.1e-07
WD40       2/7     993  1031 ..     1    46 []    21.4     0.13
WD40       3/7    1057  1095 ..     1    46 []    18.5     0.58
WD40       4/7    1098  1140 ..     1    46 []    28.1   0.0012
WD40       5/7    1148  1186 ..     1    46 []    19.4     0.41
WD40       6/7    1190  1229 ..     1    46 []    23.7    0.027
WD40       7/7    1232  1269 ..     1    46 []    36.5  3.7e-06

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 953 to 990: score 40.6, E = 2.1e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +++++ +gHt+  +V++v+  +d        ll++gs+D+t+++W
   mKIAA1708   953    PlQCVHIAEGHTK--AVLCVDSTDD--------LLFTGSkDRTCKVW 989  

                   d<-*
                   +   
   mKIAA1708   990 N    990  

WD40: domain 2 of 7, from 993 to 1031: score 21.4, E = 0.13
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++ +++l  H +   V sv+++         +l+++ s+   i++W
   mKIAA1708   993    TgQEIMSLGVHPN--NVVSVKYCNYT------SLVFTVStSY-IKVW 1030 

                   d<-*
                   d   
   mKIAA1708  1031 D    1031 

WD40: domain 3 of 7, from 1057 to 1095: score 18.5, E = 0.58
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ +  ++  ++   ++ +a +p+g      ++l+++s++  +r+W
   mKIAA1708  1057    StSRTVAIPSGES--QINQIALNPTG------TFLYAASgNA-VRMW 1094 

                   d<-*
                   d   
   mKIAA1708  1095 D    1095 

WD40: domain 4 of 7, from 1098 to 1140: score 28.1, E = 0.0012
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        + + +l+gH g  pV ++++++ +   ++ +l+++gs+D+ i+++
   mKIAA1708  1098    RfQSTGKLTGHLG--PVMCLTVDQIS---NGQDLIITGSkDHYIKMF 1139 

                   d<-*
                   d   
   mKIAA1708  1140 D    1140 

WD40: domain 5 of 7, from 1148 to 1186: score 19.4, E = 0.41
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      t ++++ +++ H +  ++ ++a+  d         l+sgs+D+ i+ 
   mKIAA1708  1148    TvSPTHNFEpPHYD--GIEALAIQGD--------NLFSGSrDNGIKK 1184 

                   Wd<-*
                   Wd   
   mKIAA1708  1185 WD    1186 

WD40: domain 6 of 7, from 1190 to 1229: score 23.7, E = 0.027
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ l ++ ++H++  +V+++   p +       +l+sg++ g ++lW
   mKIAA1708  1190    KgLLQQVPNAHKD--WVCALGLVPGH------PVLLSGCrGGILKLW 1228 

                   d<-*
                   +   
   mKIAA1708  1229 N    1229 

WD40: domain 7 of 7, from 1232 to 1269: score 36.5, E = 3.7e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t  ++ +++gH++  p+++++++++        +++++ +D+t+r+W
   mKIAA1708  1232    TfVPVGEMRGHDS--PINAICVNST--------HVFTAAdDRTVRIW 1268 

                   d<-*
                   +   
   mKIAA1708  1269 K    1269 

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