hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02904/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1707  ( 1051 res)   mbh02904

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Peptidase_C48 Ulp1 protease family, C-terminal cataly   195.5    8.2e-55   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Peptidase_C48   1/1     761  1037 ..     1   245 []   195.5  8.2e-55

Alignments of top-scoring domains:
Peptidase_C48: domain 1 of 1, from 761 to 1037: score 195.5, E = 8.2e-55
                   *->isitmrdlktltkkewlnDtiidfylrylaerllpdPilkekftsal
                        +t++dl++l+++e+lnD iidfyl+yl +++       +++  ++
   mKIAA1707   761    LGVTNEDLECLEEGEFLNDVIIDFYLKYLLLEK------ASDELVER 801  

                   thffnsFfytklksrfkwgd.e......kdelykdvkrgtargekkkkkd
                   +h+f+sFfy++l+++     +++++ +  ++++ +v+++t      ++  
   mKIAA1707   802 SHIFSSFFYKCLTRKENNLTeDnpdlsvAQRRHRRVRTWT------RHIN 845  

                   lfdkDyiyvPinedgkksHWvllvIdlpdkkk..................
                   +f+kDyi+vP+ne +   HW+l+vI+ p  +    ++ +++ +++ ++++
   mKIAA1707   846 IFNKDYIFVPVNESS---HWYLAVICFPWLEEavyedcpqtvsqqfqgqq 892  

                   ......................................kdqstivilDSl
                   ++++++ ++++++++++ +++ +++++++ + + +++ ++ ++i ilDSl
   mKIAA1707   893 sqhdhkmtdndphttstvstsaedsqstevnmsvpkkmCKRPCILILDSL 942  

                   islntekavktitalarplsdelpylkrerlslkksfdkkswdlqpfeik
                      +  + v    +l+++l++e++  kr+  +  ++f+k++++       
   mKIAA1707   943 KAASIQNTVQ---NLREYLEVEWEV-KRK--T-HREFSKTNMV------- 978  

                   rltmkvPQQpngyDCGiyvlkfielfaegppqdfmttindkklkdlksfr
                    l++kvP+Q n++DCG+y l+++e f+++p+  f ++i   + k+ ++  
   mKIAA1707   979 DLCPKVPKQDNSSDCGVYLLQYVESFFQDPIVNFELPIH--LEKWFPRHV 1026 

                   kklakeiyeel<-*
                   +k+++e+++el   
   mKIAA1707  1027 IKTKREDIREL    1037 

//