hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mej/mej02494/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1706  ( 607 res)   mej02494

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR00426 TIGR00426: competence protein ComEA helix-h    99.5    6.8e-26   2
comE      comE: comEA protein                            14.0    2.3e-05   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR00426   1/2      76   138 ..     1    70 []    56.3  6.5e-13
comE        1/1      30   138 ..     1   124 []    14.0  2.3e-05
TIGR00426   2/2     174   235 ..     1    70 []    42.6  8.8e-09

Alignments of top-scoring domains:
TIGR00426: domain 1 of 2, from 76 to 138: score 56.3, E = 6.5e-13
                   *->SDeGkGakvnINtAtaeELqkalsGVGakKAeAIVaYREeyGrFktv
                        e    ++nINtAt eEL   l GV    A  IV YRE  G Fk v
   mKIAA1706    76    --E----RLNINTATEEELMT-LPGVTRAVARSIVEYREYIGGFKKV 115  

                   EdLkkVsGiGekllEknkasitl<-*
                   EdL  VsG+G   lE  k  i +   
   mKIAA1706   116 EDLALVSGVGATKLEQVKFEICV    138  

comE: domain 1 of 1, from 30 to 138: score 14.0, E = 2.3e-05
                   *->GeRviDaieKAGGltEqAdeksvNTLAeKlsDemfVYvPkkGEeeas
                       +Rvi     +G +    +  s+        D        k++++  
   mKIAA1706    30    -SRVILLWLAMGSTL--GCHRSIP------RDPSDLSHNRKFSAACN 67   

                   qqtGlevqseagkeaaVNlNkAsleELqalpGiGPaKAkAIIeYREeNGa
                           +        N+N+A++eEL  lpG+  a A  I+eYRE  G 
   mKIAA1706    68 FS------NILVNQERLNINTATEEELMTLPGVTRAVARSIVEYREYIGG 111  

                   FkSvddLtKVsGIGeKslEKLKdyvtV<-*
                   Fk v+dL  VsG+G   lE  K  + V   
   mKIAA1706   112 FKKVEDLALVSGVGATKLEQVKFEICV    138  

TIGR00426: domain 2 of 2, from 174 to 235: score 42.6, E = 8.8e-09
                   *->SDeGkGakvnINtAtaeELqkalsGVGakKAeAIVaYREeyGrFktv
                             +vnINtAt+  L     G   k A  IV YR e+G+F+ v
   mKIAA1706   174    -------RVNINTATLAQLMS-VRGLSEKMALSIVDYRREHGPFRSV 212  

                   EdLkkVsGiGekllEknkasitl<-*
                   EdL +  Gi  + l +++  +     
   mKIAA1706   213 EDLVRMDGINAAFLDRIRHQVFA    235  

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