hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mej/mej02494/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1706  ( 607 res)   mej02494

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HhH1     Helix-hairpin-helix DNA-binding motif class     44.7    1.2e-08   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HhH1       1/3      86   105 ..     1    20 []    20.4     0.26
HhH1       2/3     116   135 ..     1    20 []     6.2  4.5e+02
HhH1       3/3     183   202 ..     1    20 []    18.2      1.2

Alignments of top-scoring domains:
HhH1: domain 1 of 3, from 86 to 105: score 20.4, E = 0.26
                   *->eeLlkvpGiGpktAekilea<-*
                      eeL+ +pG+ +++A++i+e+   
   mKIAA1706    86    EELMTLPGVTRAVARSIVEY    105  

HhH1: domain 2 of 3, from 116 to 135: score 6.2, E = 4.5e+02
                   *->eeLlkvpGiGpktAekilea<-*
                      e+L  v+G+G  + e+++ +   
   mKIAA1706   116    EDLALVSGVGATKLEQVKFE    135  

HhH1: domain 3 of 3, from 183 to 202: score 18.2, E = 1.2
                   *->eeLlkvpGiGpktAekilea<-*
                       +L++v G+++k+A +i+++   
   mKIAA1706   183    AQLMSVRGLSEKMALSIVDY    202  

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