hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mej/mej02494/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1706  ( 607 res)   mej02494

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
HHH           Helix-hairpin-helix motif                  42.3    1.1e-08   2
Exo_endo_phos Endonuclease/Exonuclease/phosphatase fa    30.3    4.6e-05   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
HHH             1/2      76   105 ..     1    30 []    28.8  0.00012
HHH             2/2     173   202 ..     1    30 []    13.5     0.41
Exo_endo_phos   1/1     299   576 ..     1   202 []    30.3  4.6e-05

Alignments of top-scoring domains:
HHH: domain 1 of 2, from 76 to 105: score 28.8, E = 0.00012
                   *->slegikpasreeLlalpGVGpktAeaIlsy<-*
                      +  +i +a++eeL++lpGV +++A++I +y   
   mKIAA1706    76    ERLNINTATEEELMTLPGVTRAVARSIVEY    105  

HHH: domain 2 of 2, from 173 to 202: score 13.5, E = 0.41
                   *->slegikpasreeLlalpGVGpktAeaIlsy<-*
                         +i +a+  +L+++ G ++k+A +I +y   
   mKIAA1706   173    PRVNINTATLAQLMSVRGLSEKMALSIVDY    202  

Exo_endo_phos: domain 1 of 1, from 299 to 576: score 30.3, E = 4.6e-05
                   *->lkvltwNvnglra.l.l.......llellr.edpDvicLQEvklsp.
                      ++++twN +g++ ++ ++++ ++ ++ +l ++ + ++++QE  +++ 
   mKIAA1706   299    FRLATWNLQGCSVeKaNnpgvrevVCMTLLeNSIKLLAVQELLDKEa 345  

                   slll.l.ll.gyvvytgfgg.gggkgGVailsklpllsvilgi.......
                      + ++l+++   +     +g++++  +i+  +p +++ +g   ++   
   mKIAA1706   346 LEKFcTeLNqPIL-PNIRKWkGSRGCWRSIVAEKPSNQLQKGPcysgflw 394  

                   ............................dfi.rvilasgt.fvvvntHlp
                   ++  + + ++ +++++++++++ +  ++     + +++ +++++vn  l+
   mKIAA1706   395 dtaanvelrdipgresspsnghakavgpSPFlARFKVGSNdLTLVNLQLT 444  

                   agg............rldeRlaqyaelldflsfrsdpvilcGDfNarpde
                   a   ++ +++++++++  + l+++ +l++ l+ + ++v+++GDf   pd+
   mKIAA1706   445 ALAlpgaenssknhsDGHRLLNFALTLQETLK-GEKDVVILGDFGQGPDS 493  

                   idsa.lk.igkstlelpigfppTywsyrgssekkrtpsrlDrilvsg.ll
                    d+  l++ + ++  l   + +T+ s+r+           D i+ s++l+
   mKIAA1706   494 NDYDiLRrEKFHH--LVPAHTFTNISTRN----PQGSKSVDNIWISKsLK 537  

                   .rvvil.ille...............vlgSDHrPVlatl<-*
                   + ++    +  ++ +++  +++ + +  +S H+PVla+l   
   mKIAA1706   538 kVFTGHwAVVRegltnpwipdnwswgGVASEHCPVLAEL    576  

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