hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00641/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1705  ( 562 res)   mbh00641

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DDHD     DDHD domain                                    390.7   1.4e-113   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DDHD       1/1     301   548 ..     1   267 []   390.7 1.4e-113

Alignments of top-scoring domains:
DDHD: domain 1 of 1, from 301 to 548: score 390.7, E = 1.4e-113
                   *->LdFkvenfFaiGSPlGlfltiRgtkiGDRPEFPnldslDllvsrpaC
                      L+FkvenfF++GSPl++fl++Rg+++G      n +s+D++++r++C
   mKIAA1705   301    LKFKVENFFCMGSPLAVFLALRGIRPG------NSGSQDHILPREIC 341  

                   kqfYNIFHPlDPvAYRLEPLvvpefsKhikPvkIphykgrkrLglelsep
                   ++++NIFHP+DPvAYRLEPL+ +++s +i+Pv+I++y+++++L++e ++p
   mKIAA1705   342 NRLLNIFHPTDPVAYRLEPLILKHYS-NISPVQIHWYNTSNPLPYEHMKP 390  

                   ltrviadlpqnflsnlqssikstnvltaasgasrkneeeteevkestars
                    +  +a+ p++++++++++ ++++v+++++++++++e++t+++k+s+++ 
   mKIAA1705   391 NFLNPAKEPTSVSDSENIAAIPSPVTSPVLSRRHYGESITNIGKASILG- 439  

                   GCSPRmTpapeqtenltemliareeravesqpssfsrdSiedekktvaen
                           a++++++l++ml++r++r+++sqps+ s+dS ed+kk++a++
   mKIAA1705   440 --------AASIGKGLGGMLFSRFGRSSASQPSEPSKDSLEDDKKPSASP 481  

                   ietakeaskeehlaekvlmskLngtkRIDYvLqePaallafnsYlsalks
                     t++++++++h+ +++l+s+L+  +RID++L+e   +l++++Y+sa++s
   mKIAA1705   482 STTTVATQTLPHSGSGFLDSALELEHRIDFELRE---GLVESRYWSAVTS 528  

                   HasYWeSeDvAlFlLkeiyr<-*
                   H++YW+S+DvAlFlL+++y+   
   mKIAA1705   529 HTAYWSSLDVALFLLTFMYK    548  

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