hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj09089/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1703  ( 891 res)   mfj09089

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    186.3    2.9e-51  12

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/12     50    73 ..     1    23 []    13.7      8.9
ZnF_C2H2   2/12     80   104 ..     1    23 []    19.7     0.41
ZnF_C2H2   3/12    122   145 ..     1    23 []    21.5     0.12
ZnF_C2H2   4/12    173   197 ..     1    23 []     9.8       25
ZnF_C2H2   5/12    203   225 ..     1    23 []    20.1     0.32
ZnF_C2H2   6/12    231   254 ..     1    23 []    24.0    0.021
ZnF_C2H2   7/12    264   286 ..     1    23 []    29.2  0.00057
ZnF_C2H2   8/12    292   316 ..     1    23 []    27.2   0.0023
ZnF_C2H2   9/12    322   344 ..     1    23 []    20.6     0.22
ZnF_C2H2  10/12    350   372 ..     1    23 []    26.3   0.0042
ZnF_C2H2  11/12    378   403 ..     1    23 []    18.3      1.1
ZnF_C2H2  12/12    409   432 ..     1    23 []    23.5    0.029

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 12, from 50 to 73: score 13.7, E = 8.9
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                       +C+  Cg+     + L+ H+  +H   
   mKIAA1703    50    IRCDD-CGFLADGLsGLNVHIAmKH    73   

ZnF_C2H2: domain 2 of 12, from 80 to 104: score 19.7, E = 0.41
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      ++C + Cgksf ++++L +H+ +  H   
   mKIAA1703    80    FHCLL-CGKSFYTEsNLHQHLAsaGH    104  

ZnF_C2H2: domain 3 of 12, from 122 to 145: score 21.5, E = 0.12
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC + C + f s+++L  H++++H   
   mKIAA1703   122    FKCVK-CTEPFDSEqNLFLHIKgQH    145  

ZnF_C2H2: domain 4 of 12, from 173 to 197: score 9.8, E = 25
                   *->ykCpigCg..ksfssk.aLkrHmrvH<-*
                       +C++ Cg+  + s+  a+  H+r+H   
   mKIAA1703   173    NVCKY-CGkmCRSSNSmAFLAHIRTH    197  

ZnF_C2H2: domain 5 of 12, from 203 to 225: score 20.1, E = 0.32
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC+i C++ + + ++ ++H+++H   
   mKIAA1703   203    FKCKI-CHFATAQLgDARNHVKRH    225  

ZnF_C2H2: domain 6 of 12, from 231 to 254: score 24.0, E = 0.021
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ykC++ Cg  f  k++L+ H+ ++H   
   mKIAA1703   231    YKCHV-CGVAFVMKkHLNTHLLgKH    254  

ZnF_C2H2: domain 7 of 12, from 264 to 286: score 29.2, E = 0.00057
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C++sf+ k aL++Hm+ H   
   mKIAA1703   264    FTCHL-CDRSFTEKwALNNHMKLH    286  

ZnF_C2H2: domain 8 of 12, from 292 to 316: score 27.2, E = 0.0023
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      +kC+++ C++sf +++a+k H+r+H   
   mKIAA1703   292    FKCTWpTCHYSFLTAsAMKDHYRTH    316  

ZnF_C2H2: domain 9 of 12, from 322 to 344: score 20.6, E = 0.22
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cg+   +++aL++H r+H   
   mKIAA1703   322    FLCDL-CGFAGGTRhALTKHRRQH    344  

ZnF_C2H2: domain 10 of 12, from 350 to 372: score 26.3, E = 0.0042
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C++  +++++L+rH rvH   
   mKIAA1703   350    FKCDE-CNFASTTQsHLTRHKRVH    372  

	[output cut off at A = 10 top alignments]
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