hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj09089/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1703  ( 891 res)   mfj09089

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         173.7      3e-48  12

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/12     50    73 ..     1    24 []    11.4      7.9
zf-C2H2    2/12     80   104 ..     1    24 []    24.8    0.002
zf-C2H2    3/12    122   145 ..     1    24 []    20.3    0.046
zf-C2H2    4/12    173   197 ..     1    24 []    15.5      1.3
zf-C2H2    5/12    203   225 ..     1    24 []    18.0     0.22
zf-C2H2    6/12    231   254 ..     1    24 []    25.0   0.0018
zf-C2H2    7/12    264   286 ..     1    24 []    29.2  9.5e-05
zf-C2H2    8/12    292   316 ..     1    24 []    26.1  0.00083
zf-C2H2    9/12    322   344 ..     1    24 []    15.9     0.94
zf-C2H2   10/12    350   372 ..     1    24 []    26.8  0.00051
zf-C2H2   11/12    378   403 ..     1    24 []     8.4       15
zf-C2H2   12/12    409   432 ..     1    24 []    20.0    0.057

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 12, from 50 to 73: score 11.4, E = 7.9
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +C+ dCg      s L+ H+ ++H   
   mKIAA1703    50    IRCD-DCGFLADGLSGLNVHIAMkH    73   

zf-C2H2: domain 2 of 12, from 80 to 104: score 24.8, E = 0.002
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      + C   CgksF + snL++Hl + +H   
   mKIAA1703    80    FHCL-LCGKSFYTESNLHQHLASagH    104  

zf-C2H2: domain 3 of 12, from 122 to 145: score 20.3, E = 0.046
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      +kC  +C + F +  nL  H++ +H   
   mKIAA1703   122    FKCV-KCTEPFDSEQNLFLHIKGqH    145  

zf-C2H2: domain 4 of 12, from 173 to 197: score 15.5, E = 1.3
                   *->ykCpfdCgksFsrk..snLkrHlrtH<-*
                       +C+ +Cgk+++++++  + +H+rtH   
   mKIAA1703   173    NVCK-YCGKMCRSSnsMAFLAHIRTH    197  

zf-C2H2: domain 5 of 12, from 203 to 225: score 18.0, E = 0.22
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +C+ +  + ++ ++H ++H   
   mKIAA1703   203    FKCK-ICHFATAQLGDARNHVKRH    225  

zf-C2H2: domain 6 of 12, from 231 to 254: score 25.0, E = 0.0018
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ykC+ +Cg +F  k++L++Hl  +H   
   mKIAA1703   231    YKCH-VCGVAFVMKKHLNTHLLGkH    254  

zf-C2H2: domain 7 of 12, from 264 to 286: score 29.2, E = 9.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  C++sF+ k  L++H++ H   
   mKIAA1703   264    FTCH-LCDRSFTEKWALNNHMKLH    286  

zf-C2H2: domain 8 of 12, from 292 to 316: score 26.1, E = 0.00083
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      +kC+++ C++sF + s +k H rtH   
   mKIAA1703   292    FKCTWpTCHYSFLTASAMKDHYRTH    316  

zf-C2H2: domain 9 of 12, from 322 to 344: score 15.9, E = 0.94
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+  Cg +  +++ L++H+r H   
   mKIAA1703   322    FLCD-LCGFAGGTRHALTKHRRQH    344  

zf-C2H2: domain 10 of 12, from 350 to 372: score 26.8, E = 0.00051
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +C+ + +++s+L+rH+r+H   
   mKIAA1703   350    FKCD-ECNFASTTQSHLTRHKRVH    372  

zf-C2H2: domain 11 of 12, from 378 to 403: score 8.4, E = 15
                   *->ykCpfdCgksFsrksnLkrHlrt...H<-*
                      y+Cp  C+++ +  +n ++H+  +++H   
   mKIAA1703   378    YRCP-WCDYRSNCAENIRKHILHtgkH    403  

zf-C2H2: domain 12 of 12, from 409 to 432: score 20.0, E = 0.057
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y Cp +C++  + + ++++Hl+ +H   
   mKIAA1703   409    YNCP-KCDYGTNVPVEFRNHLKEqH    432  

//