hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp07135/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1697  ( 814 res)   mbp07135

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Dynein_heavy Dynein heavy chain                         891.3   2.9e-264   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Dynein_heavy   1/1      66   811 ..     1   783 []   891.3 2.9e-264

Alignments of top-scoring domains:
Dynein_heavy: domain 1 of 1, from 66 to 811: score 891.3, E = 2.9e-264
                   *->lentypnpkvdwlsdqqWdsiarLselee...FrgLdddleknapdk
                       ++  p+p   wl+ q W s++ L+e  + + F gL+ ++     + 
   mKIAA1697    66    EKERPPKPEAPWLPIQMWFSCCDLEE--SfpiFEGLTKHILLRPISI 110  

                   rWkkwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDR
                       +    +P   e  Pk+  +e+k+ +  l+ s F+KL+l+++ ++++
   mKIAA1697   111 KLGSFETYINPPVWEGYPKQRHEEEKDHVWGLDFSSFHKLILVKCCKEEK 160  

                   ltyalrnFveekLpGekfvepdppldlskiyekeSspstPilFiLSPGaD
                   ++ al++Fv+e+L G++f+e+ pp+dl+  y+ + s+stP++FiLS+G+D
   mKIAA1697   161 VVFALTDFVIENL-GKQFIET-PPVDLATLYQ-DMSNSTPLVFILSTGSD 207  

                   PskdvekLAkkmGFtfdnGkklhSiSLGQGQgpniAekaIetAaksGhWV
                   P++ +  +A++ G+     ++ +SiSLGQGQgp iAek+I+ A k G+WV
   mKIAA1697   208 PMGAFQRFARESGYA----ERVQSISLGQGQGP-IAEKMIKDAMKTGNWV 252  

                   lLQNiHLaasWLptLEKkLesltp.pegtHpdFRLFLTaEpaprPeehIf
                   +LQN+HLa sW+   E +   +t +       FRLFL+++p ++     f
   mKIAA1697   253 FLQNCHLAVSWMLAMEELIKTFTDpNQTIKDTFRLFLSSMPCST-----F 297  

                   PiglLqnSiKiTNEPPtGlKANLlraysnDPIfdqeflemckkpaefkrl
                   P+++LqnS+K+TNEPP+Gl+AN++ra++     ++ f+e     +++++l
   mKIAA1697   298 PVTVLQNSVKVTNEPPKGLRANIRRAFTE---MTPSFFEENILGMKWRKL 344  

                   lFlLCfFHAVVqERRkFGPlGWNksYEFNesDLriSvdvldnyLeanakG
                   +F++CfFHA++qER+kFGPlGWN+ YEFN+sD++++++ l+ y  +    
   mKIAA1697   345 IFGICFFHAIIQERKKFGPLGWNICYEFNDSDRECALLNLNLYCHEG--- 391  

                   RqNidpdkvPWeaLRYlfGeimYGGrItDdwDrRLLrtyLeefftpelfd
                          k+PW+aL Y++Gei+YGGr+tD wD+R+Lrt+L +ff pe +d
   mKIAA1697   392 -------KIPWDALIYITGEITYGGRVTDTWDQRCLRTVLKRFFSPETLD 434  

                   gnadyeLapkidgdlgfavPpntdyeeYieyIeesLPsessPelfGLhpN
                   +  dy +     ++++f +P   + +++ eyIe+ LP +++Pe+fG+h+N
   mKIAA1697   435 D--DYTYSD---SGIYF-APLADSLQDFKEYIED-LPLIDDPEIFGMHEN 477  

                   AEIgfltqeteklirtllelQpreaggeldggsgekvsrkkdssEEvvkq
                   A+ +f+ +et++li+t+le+Qpr+++    gg+g  +s+     +E+v++
   mKIAA1697   478 ANLVFQYKETNTLITTILEVQPRSSS----GGQG--KSN-----DEIVQE 516  

                   vlrdileklpkklCqklFdke...elmlkrt.eeikdPlfvVlvQEierm
                   + + i++++p     + + +e+ +e+    ++++  ++l++Vl QE++r+
   mKIAA1697   517 LVASIQTRVP-----ESLQMEgasESLFVKDpQGRLNSLTTVLGQEVDRF 561  

                   NkLlkeirrSLkeLdlglkGeltmsndlEeliksLlngrVPaWDmWakks
                   N Llk i+ SL+ L +++ G+++ms+++E++++s ln++VP    W + +
   mKIAA1697   562 NNLLKLIHISLETLNKAIAGLVVMSEEMEKVYQSFLNNQVPS--LWSNTA 609  

                   yPslkpLgsWvtDLlkRirQLqeWtedsGGAklglPkvvWLsGFFnPQsF
                   yPslkpLgsWv DL  R+ + + W +       g+Pk++W+sGFF+PQ F
   mKIAA1697   610 YPSLKPLGSWVKDLILRTAFVDLWLKR------GQPKSFWISGFFFPQGF 653  

                   LTAimQsvARknkwPLDkLcLdteVtkkekeeqdskep............
                   LT++ Q+ ARk+ +P+D+L + +++     ++ d+  +   ++ ++ + +
   mKIAA1697   654 LTGTLQNHARKYNLPIDELSFKYNMI---PVYRDQ--Aaviesakdiqfg 698  

                   ...........PedGvyVhGLfLEGArWDsktgllaeskpKeLfspmPVi
                   ++ + +++ ++PedGv VhG+f++  rWD k++++++++p  + +++PV+
   mKIAA1697   699 telpmdkelpsPEDGVLVHGMFMDASRWDDKDMVIEDALPGQMNPMLPVV 748  

                   wlkavpasdkqetkdvyecPVYktkaRggvLSTTGHStnyvftfnLktke
                   ++ + +     +++  y  P+Ykt aR g+LSTTGHStn+v+t++L++k 
   mKIAA1697   749 HFEPKQN-YEPVHT-LYHSPLYKTGARAGTLSTTGHSTNFVVTVLLPSKR 796  

                   dtpaskWilaGVALllq<-*
                      ++ Wi +G ALl+q   
   mKIAA1697   797 --ISDYWISKGSALLCQ    811  

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