hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm12224/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1696  ( 675 res)   mpm12224

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD zinc finger                                 65.8    5.3e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/1     486   529 ..     1    39 []    65.8  5.3e-15

Alignments of top-scoring domains:
PHD: domain 1 of 1, from 486 to 529: score 65.8, E = 5.3e-15
                   *->yC.vCgk.g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprCk<-
                      +C+vC+k+g+ll Cd +C+r yH++Cl ppl+++p+g w+CprC+  
   mKIAA1696   486    FCsVCRKsGqLLMCD-TCSRVYHLdCLEPPLKtIPKGmWICPRCQ   529  

                   *
                    
   mKIAA1696     -   -    

//