hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm12224/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1696  ( 675 res)   mpm12224

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD-finger                                      69.3    8.3e-17   1
AT_hook  AT hook motif                                   16.3       0.23   1
C1_3     C1-like domain                                   9.3       0.27   1
C1_1     Phorbol esters/diacylglycerol binding domain    -1.3       0.37   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AT_hook    1/1     421   433 ..     1    13 []    16.3     0.23
C1_3       1/1     485   511 ..     1    30 []     9.3     0.27
C1_1       1/1     479   520 ..     1    55 []    -1.3     0.37
PHD        1/1     486   531 ..     1    51 []    69.3  8.3e-17

Alignments of top-scoring domains:
AT_hook: domain 1 of 1, from 421 to 433: score 16.3, E = 0.23
                   *->kRkRGRPrKaata<-*
                      +RkRGRP+K+++    
   mKIAA1696   421    TRKRGRPPKYNAV    433  

C1_3: domain 1 of 1, from 485 to 511: score 9.3, E = 0.27
                   *->ktCdaCglpidgdpfYsCseCdFvlHeeCa<-*
                       +C++C ++++      C +C  v H++C    
   mKIAA1696   485    DFCSVCRKSGQ---LLMCDTCSRVYHLDCL    511  

C1_1: domain 1 of 1, from 479 to 520: score -1.3, E = 0.37
                   *->HhFvhrwnfkqptfCdhCgellwgslgkqGlkCswCklnvHkrChek
                          ++    +  fC++C+++       q l C++C +++H +C e 
   mKIAA1696   479    ----DG-D-IHEDFCSVCRKSG------QLLMCDTCSRVYHLDCLE- 512  

                   VppeCgcg<-*
                    p + +++   
   mKIAA1696   513 PPLKTIPK    520  

PHD: domain 1 of 1, from 486 to 531: score 69.3, E = 8.3e-17
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe
                      +CsvC+k      g+ll CD+C r +Hl+Cl ppl+ +p+g W+Cp+
   mKIAA1696   486    FCSVCRK-----SGQLLMCDTCSRVYHLDCLEPPLKTIPKGMWICPR 527  

                   Ctpk<-*
                   C+     
   mKIAA1696   528 CQDQ    531  

//