hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01218/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1691  ( 386 res)   mfj01218

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Tweety   Tweety                                          30.7    1.8e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Tweety     1/1       1   292 [.     1   434 []    30.7  1.8e-11

Alignments of top-scoring domains:
Tweety: domain 1 of 1, from 1 to 292: score 30.7, E = 1.8e-11
                   *->lhptNsvFapewdeeYlQaLllvAslpAalLilSLlglliYLitrCC
                                                                     
   mKIAA1691     -    ----------------------------------------------- -    

                   dRPPEPHGkerppktrrcVRRlsvsLiIitlmcCAaIGlGLYGNddvhnG
                                                                     
   mKIAA1691     - -------------------------------------------------- -    

                   lsqllsagikkveslviTikdqteeleeaLetrvkteLkeLEdvvekpsk
                        +a                     aL+ +  + L  LE        
   mKIAA1691     1 -----TAA--------------------ALNRTAEPNLQSLERQ------ 19   

                   nqtalsvlielvqivtgntdeAeaaAknlrgkLmkakqGddslSlvkilk
                       l  ++e +++v+   ++    + +       ++    ++Sl+ +++
   mKIAA1691    20 ----LAGRQEPLRAVQRLQTLLGTLLGYTAA--IPFWRNP-GVSLEVLAE 62   

                   vgefyEsiRWpatValLsllLlvClvllvGvAkqSkcalvvFSaiGLlvl
                    +++y  +RW++++ lL+l  ++Cl  lvG+ + Sk  lv     G l+l
   mKIAA1691    63 QVDLYDWYRWLGYLGLLLLDVIICLLVLVGLIRSSKGILVGVCLLGVLAL 112  

                   vvsWLliGlyLassVAlgDFCsdPddyvvrkaqgelGlssevlsfYnlCe
                   v+sW+  Gl+La sV+ +DFC dPd++v++       ls ++l++Y  C 
   mKIAA1691   113 VISWGALGLELAVSVGSSDFCVDPDTFVTKMVEEHSVLSGDILQYYLACS 162  

                   PavtNDpFqlRLaesrdLlnrArasieSqlqrlsevafpssaAiqksLsA
                   P+ tN pFq+ L      + +A+  ++  +  l +       A   +L+ 
   mKIAA1691   163 PRATN-PFQQKLS----GSHKALVEMQDVVAELLRNVPREHPATKDPLLR 207  

                   veeDLnvtlRlltqLsAlldCrslHkdyveAlRGLCeggLlGLslmMlas
                   v e Ln t+ +l  L+Al+dCrslH dyv Al G C +g++GL  + l+s
   mKIAA1691   208 VQEVLNGTEVNLQHLTALVDCRSLHLDYVQALTGFCYDGVEGLIYLALFS 257  

                   LLlavlLtIllivdShaWilfsklpndYadvDEddPf<-*
                   + +a +    +++++h+W    k+  d++   E++P    
   mKIAA1691   258 FVTALMFSSIVCSIPHTWQ--QKRGPDDDGEEETAPG    292  

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