hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01567/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1688  ( 1088 res)   mfj01567

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   GTPase-activator protein for Rho-like GTPase   108.1      1e-27   1
MyTH4    Domain in Myosin and Kinesin Tails              80.4    2.2e-19   1
WW                                                       29.3    0.00054   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WW         1/2      37    70 ..     1    34 []    12.8      2.6
WW         2/2      76   109 ..     1    34 []    17.0     0.88
MyTH4      1/1     727   869 ..     1   166 []    80.4  2.2e-19
RhoGAP     1/1     911  1084 ..     1   193 []   108.1    1e-27

Alignments of top-scoring domains:
WW: domain 1 of 2, from 37 to 70: score 12.8, E = 2.6
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      +    W+e++ p +    Y N +T+e  W++P++   
   mKIAA1688    37    STRLEWVEIIEPRTRERMYANLVTGECVWDPPAG    70   

WW: domain 2 of 2, from 76 to 109: score 17.0, E = 0.88
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      ++ + W e +dp++ r YYy + +++t W +P++   
   mKIAA1688    76    TSEDQWWELFDPNTSRFYYYSAASQRTVWHRPQN    109  

MyTH4: domain 1 of 1, from 727 to 869: score 80.4, E = 2.2e-19
                   *->fskkPiktsLLkleddkeedskeAvkiFkaILkfMGDlPlpkssssk
                      +s + ik++ +  +d      keA++iFk+I+++MGD+  +      
   mKIAA1688   727    WSSESIKKPMIVTSDR--HVKKEACEIFKLIQMYMGDRRAKA----- 766  

                   lytLGeaqeFnmlepspdshlelvqfIlqkglarpeLRDEiYCQliKQlt
                                     ++l+++  I +kg ++  LRDE+Y Ql++Q+t
   mKIAA1688   767 ------------------DPLHVALEIATKGWSAQGLRDELYIQLCRQTT 798  

                   k........RGWeLLylctglFpPSeSrllkyLlqFLkrradqptetpql
                   ++ + ++  RGWeL+++c++ FpP+  +++ yL+ ++ r+ d+   t + 
   mKIAA1688   799 EnfrleslaRGWELMAICLAFFPPTP-KFHSYLEGYIYRHMDPVNDTKGV 847  

                   maqglakycleGaRkqpPsrlEleAik<-*
                   +   +akyc+++  k       l+  k   
   mKIAA1688   848 AISTYAKYCYHKLQKAA-----LTGAK    869  

RhoGAP: domain 1 of 1, from 911 to 1084: score 108.1, E = 1e-27
                   *->spiPiivekCieylek.rGldteGIYRvsGsksrvkeLreafdsged
                      +++P +  ++ e++ + +G +teGI+Rv+G   +v++L+ + d++++
   mKIAA1688   911    RQLPWVQTRLSEEVLAlNGDQTEGIFRVPGDIDEVNALKLQVDQWKV 957  

                   .dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefi
                   ++               + +d+h+ A+lLKl+ ReL ePL+++e ye++i
   mKIAA1688   958 pT---------------GLEDPHVPASLLKLWYRELEEPLIPHEFYEQCI 992  

                   eaaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.H
                     +++                     +a   +++ LP+ nr +L yL+++
   mKIAA1688   993 AHYES--------------------PEAAVAVVHALPRINRMVLCYLIrF 1022 

                   LnrVa..ehsevNkMtarNLAivFgPtLlrpp...........ltdikhq
                   L+ + ++++ + +kM+++NLA+v +P+ lr+++++++   +++ +++++ 
   mKIAA1688  1023 LQVFVqpANVAITKMDVSNLAMVMAPNCLRCQsddprvifentRKEMSFL 1072 

                   nkvvetlienad<-*
                    +++++l +  +   
   mKIAA1688  1073 RVLIQHLDTSFM    1084 

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