hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01567/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1688  ( 1088 res)   mfj01567

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   RhoGAP domain                                  171.7    1.2e-47   1
MyTH4    MyTH4 domain                                    83.4    4.7e-21   1
WW       WW domain                                       17.7       0.12   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WW         1/2      38    68 ..     1    30 []     3.9      5.1
WW         2/2      77   107 ..     1    30 []    14.7     0.27
MyTH4      1/1     766   884 ..     1   118 []    83.4  4.7e-21
RhoGAP     1/1     914  1060 ..     1   155 []   171.7  1.2e-47

Alignments of top-scoring domains:
WW: domain 1 of 2, from 38 to 68: score 3.9, E = 5.1
                   *->LppgWeerkd.pdGrpYYyNhnTktTqWekP<-*
                          W+e++ +      Y N +T++  W++P   
   mKIAA1688    38    TRLEWVEIIEpRTRERMYANLVTGECVWDPP    68   

WW: domain 2 of 2, from 77 to 107: score 14.7, E = 0.27
                   *->LppgWeerkd.pdGrpYYyNhnTktTqWekP<-*
                      ++  W e +d+   r YYy   +++T W +P   
   mKIAA1688    77    SEDQWWELFDpNTSRFYYYSAASQRTVWHRP    107  

MyTH4: domain 1 of 1, from 766 to 884: score 83.4, E = 4.7e-21
                   *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW
                       ++++++  I  +g ++  LRDE+Y Q+++Q+t+N     +S++rGW
   mKIAA1688   766    ADPLHVALEIATKGWSAQGLRDELYIQLCRQTTENFR--LESLARGW 810  

                   eLlylctgtFpPSeellkyLsEqFlhrraheqlsgp...elegyaadcqe
                   eL+ +c++ FpP+ ++  yL+ +++ r  + +  ++++ +   ya++c+ 
   mKIAA1688   811 ELMAICLAFFPPTPKFHSYLE-GYIYRHMD-PVNDTkgvAISTYAKYCYH 858  

                   rLkktqknGsRkyp..PsrlEieAik<-*
                   +L+k++  G+ k +++P+++Ei  +k   
   mKIAA1688   859 KLQKAALTGAKKGLkkPNVEEIRHAK    884  

RhoGAP: domain 1 of 1, from 914 to 1060: score 171.7, E = 1.2e-47
                   *->PlivekCieflek.rGLdtEGIyRvsGsksrikeLreafdrgedvdl
                      P++  ++ e++ + +G +tEGI+Rv+G++ ++++L+ + d++++   
   mKIAA1688   914    PWVQTRLSEEVLAlNGDQTEGIFRVPGDIDEVNALKLQVDQWKV--- 957  

                   ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerle
                    +++ ed+hv AslLKl+ ReL ePL+++e+ye +i+  ++s       e
   mKIAA1688   958 -PTGLEDPHVPASLLKLWYRELEEPLIPHEFYEQCIA-HYES------PE 999  

                   alrellrkLPpaNrdtLryLlahLnrVaq..nsevNkMtahNLAivFgPt
                   a  ++++ LP+ Nr +L+yL+++L+ + q+ n +++kM+++NLA+v++P+
   mKIAA1688  1000 AAVAVVHALPRINRMVLCYLIRFLQVFVQpaNVAITKMDVSNLAMVMAPN 1049 

                   Llrppdgdsad<-*
                   +lr++++d++    
   mKIAA1688  1050 CLRCQSDDPRV    1060 

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