hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg21605/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1686 ( 1205 res) mbg21605 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PH Pleckstrin homology domain. 73.7 2.4e-17 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PH 1/1 107 207 .. 1 82 [] 73.7 2.4e-17 Alignments of top-scoring domains: PH: domain 1 of 1, from 107 to 207: score 73.7, E = 2.4e-17 *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk...kpkgsipL v+++GwL+k+ +++ + wkkr+fvL + +L+yy++++++ gsi L mKIAA1686 107 VVRRGWLYKQDstgMkLWKKRWFVLSDLCLFYYRDEkeeGILGSILL 153 sgcsvre.p.........cFeivt.dr.tlllqAeseeereeWvealqsa + ++ + + +++ +++ +F+ +++ +t+++++++ +e+e W++a+ +a mKIAA1686 154 PSFQIAMlTaedhinrkyAFKAAHpNMrTYYFCTDTGKEMELWMKAMLDA 203 iaka<-* + + mKIAA1686 204 ALVQ 207 //