hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg21605/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1686 ( 1205 res) mbg21605 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PH PH domain 86.1 7e-22 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PH 1/1 107 205 .. 1 92 [] 86.1 7e-22 Alignments of top-scoring domains: PH: domain 1 of 1, from 107 to 205: score 86.1, E = 7e-22 *->vikeGwLlkkg..gkkswkkRyfvLfndvLlyykdkk.kkpkgsipL v+++GwL+k++++g k wkkR+fvL + +L+yy+d+k++ gsi L mKIAA1686 107 VVRRGWLYKQDstGMKLWKKRWFVLSDLCLFYYRDEKeEGILGSILL 153 sgiqvekvpdn...krkncFeirt.dretlllqaeseeerkeWvkaiqsa + q+ +++ ++ +rk++F+ +++ +t+++++++ +e++ W+ka +a mKIAA1686 154 PSFQIAMLTAEdhiNRKYAFKAAHpNMRTYYFCTDTGKEMELWMKAMLDA 203 ir<-* + mKIAA1686 204 AL 205 //