hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02812/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1682  ( 801 res)   mbh02812

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
Myotub-related Myotubularin-related                     -10.6     0.0023   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Myotub-related   1/1     287   351 ..     1   123 []   -10.6   0.0023

Alignments of top-scoring domains:
Myotub-related: domain 1 of 1, from 287 to 351: score -10.6, E = 0.0023
                   *->YelCpsYPakLvVPksisDdeLkkvAkFRsrgRlPVLswrHqengAv
                      Y +++  Pa++vVP+ + +d++++    ++++ +P ++w +  ng++
   mKIAA1682   287    YRVSDRLPAYFVVPTPLPEDDVRR----FQGHGIPIWCWSC-HNGSA 328  

                   IvRcSQPLvGfsgkRckeDEkllkailkanaiDekiqskklyIvDaRprt
                   ++ +S                       a +                   
   mKIAA1682   329 LLKMS-----------------------ALP------------------- 336  

                   nAlaNrAkGGGyEneenYpnaelvfl<-*
                               E+++   +  + fl   
   mKIAA1682   337 -----------KEQDDGALQVQKSFL    351  

//