hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/meh/meh02165/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1679  ( 1608 res)   meh02165

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TSP_1    Thrombospondin type 1 domain                   134.1    2.5e-36  10

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TSP_1      1/10    184   233 ..     1    55 []    19.2    0.002
TSP_1      2/10    341   399 ..     1    55 []    34.1  3.3e-06
TSP_1      3/10    489   543 ..     1    55 []     2.0     0.24
TSP_1      4/10    606   661 ..     1    55 []    30.6  3.7e-05
TSP_1      5/10    742   796 ..     1    55 []     9.7    0.028
TSP_1      6/10    876   924 ..     1    55 []    15.6   0.0056
TSP_1      7/10   1006  1055 ..     1    55 []    34.2  2.9e-06
TSP_1      8/10   1133  1182 ..     1    55 []     9.6    0.029
TSP_1      9/10   1253  1303 ..     1    55 []    31.0  2.8e-05
TSP_1     10/10   1376  1432 ..     1    55 []    20.1   0.0016

Alignments of top-scoring domains:
TSP_1: domain 1 of 10, from 184 to 233: score 19.2, E = 0.002
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete
                      s++s+WS C   CGk  + R+Rv  +p P  +gg +C+  ++   ++
   mKIAA1679   184    SEFSPWSTCPEGCGKKLQHRTRVAIAP-PL-YGGLQCPNLTE---SR 225  

                   aCdmmdkC<-*
                   aC+    C   
   mKIAA1679   226 ACEAPVSC    233  

TSP_1: domain 2 of 10, from 341 to 399: score 34.1, E = 3.3e-06
                   *->spWseWSpCSVTCGk.....GirtRqRvcnspaPqkkggepCtgdvq
                      s+Ws+WSpCS+TC +++ ++G+r+R R++++ a    gg+ C++  +
   mKIAA1679   341    SEWSPWSPCSKTCRSgtlspGVRSRSRNVKHIA--IGGGQECPELLE 385  

                   eleteaCd....mmdkC<-*
                       e C+ +++  ++C   
   mKIAA1679   386 ---KETCIaegeFLQPC    399  

TSP_1: domain 3 of 10, from 489 to 543: score 2.0, E = 0.24
                   *->spWseWSpCSV.TC....G.kGirtRqRvcnspaPqkkggepCtgdv
                      s Ws+W pC  + C++++G+kG r+RqR + ++    + g++   ++
   mKIAA1679   489    SSWSTWGPCVFeNChdpqGkKGFRMRQRHVLME----STGPMGRCPH 531  

                   qeleteaCdmmdkC<-*
                      e+ +C + + C   
   mKIAA1679   532 LA-ESVPC-EDPMC    543  

TSP_1: domain 4 of 10, from 606 to 661: score 30.6, E = 3.7e-05
                   *->spWseWSpCSVTCGk....GirtRqRvcnspaPqkkggepCtgdvqe
                      s+W+ WS+CS +C++++++G +tR R++ + a   +gg+ C+  ++ 
   mKIAA1679   606    SEWTVWSSCSQSCSNknsdGKQTRSRSILALAG--EGGKTCPSSQEL 650  

                   leteaCdmmdkC<-*
                    e + C + + C   
   mKIAA1679   651 QEYRLC-NDHSC    661  

TSP_1: domain 5 of 10, from 742 to 796: score 9.7, E = 0.028
                   *->spWseWSpCSVTCGkG....irtRqRvcnspaPqkkggepCtgdvqe
                      + +seW+pC  +C  G+++  ++R+R + ++a    gg+ C+++  e
   mKIAA1679   742    TAFSEWTPCPRPCQPGnttiKQSRYRIIIQEAA--NGGQECPDTLFE 786  

                   leteaCdmmdkC<-*
                      + C+    C   
   mKIAA1679   787 --ERECEDISLC    796  

TSP_1: domain 6 of 10, from 876 to 924: score 15.6, E = 0.0056
                   *->spWseWSpCSVTCG.kGirtRqRvcnspaPqkkggepCtgdvqe..l
                      +pWs  +pCS+ C   +ir Rq + +s++     +e C +    + +
   mKIAA1679   876    TPWSKFTPCSKNCEaTQIRRRQLTGKSRK-----KEKCQDASLYplV 917  

                   eteaCdmmdkC<-*
                   e e+C    +C   
   mKIAA1679   918 EMEPC----PC    924  

TSP_1: domain 7 of 10, from 1006 to 1055: score 34.2, E = 2.9e-06
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete
                      s+Ws W +CS +CG G+r+R +  + + P  +gg pC+  +     +
   mKIAA1679  1006    SDWSSWGSCSSSCGIGVRIRSKWLKEK-PY-SGGRPCPKLDLK--NQ 1048 

                   aCdmmdkC<-*
                   +  ++ +C   
   mKIAA1679  1049 VH-EAVPC    1055 

TSP_1: domain 8 of 10, from 1133 to 1182: score 9.6, E = 0.029
                   *->spWseWSpCSVTC...GkGirtRqRvcnspaPqkkggepCtgdvqel
                      s+W++WS C  +C+++ ++ rtR+ ++ s      ++  C +d q  
   mKIAA1679  1133    SEWGTWSRCPQSCdphAMQRRTRHLLRPSL-----NSRTCGEDSQ-- 1172 

                   eteaCdmmdkC<-*
                    +++C   + C   
   mKIAA1679  1173 -VRPCLLNENC    1182 

TSP_1: domain 9 of 10, from 1253 to 1303: score 31.0, E = 2.8e-05
                   *->spWseWSpCSVTCG.kGirtRqRvcnspaPqkkggepCtgdvqelet
                      s W++W++CS TCG++G ++R+R + +p +   +g +C+ + ++   
   mKIAA1679  1253    SGWTTWTECSQTCGqGGRMSRTRFIIMPTQ--GEGRQCPTELTQ--Q 1295 

                   eaCdmmdkC<-*
                   ++C  + +C   
   mKIAA1679  1296 KPC-PVTPC    1303 

TSP_1: domain 10 of 10, from 1376 to 1432: score 20.1, E = 0.0016
                   *->spWseWSpCSVTCGkG.........irtRqRvcnspaPqkkggepCt
                      +pWseWS C  TC  G++ +++++++r+R+  ++s     ++  +C+
   mKIAA1679  1376    TPWSEWSKCELTCIDGrsfettgrqSRSRTFIIQSF----ENQDSCP 1418 

                   gdvqeleteaCdmmdkC<-*
                    +v e  t++C +  kC   
   mKIAA1679  1419 QQVLE--TRPC-TGGKC    1432 

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