hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mia/mia50030/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1675 ( 707 res) mia50030 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 72.8 4.1e-17 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnF_C2H2 1/3 383 405 .. 1 23 [] 31.5 0.00012 ZnF_C2H2 2/3 411 434 .. 1 23 [] 29.8 0.00037 ZnF_C2H2 3/3 440 462 .. 1 23 [] 24.4 0.016 Alignments of top-scoring domains: ZnF_C2H2: domain 1 of 3, from 383 to 405: score 31.5, E = 0.00012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk f++ +L+rH+r+H mKIAA1675 383 YTCRY-CGKIFPRSaNLTRHLRTH 405 ZnF_C2H2: domain 2 of 3, from 411 to 434: score 29.8, E = 0.00037 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C++ C++sfs ++L+rH+r++H mKIAA1675 411 YRCKY-CDRSFSISsNLQRHVRnIH 434 ZnF_C2H2: domain 3 of 3, from 440 to 462: score 24.4, E = 0.016 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C+++f ++++L rH+++H mKIAA1675 440 FKCHL-CNRCFGQQtNLDRHLKKH 462 //