hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mia/mia50030/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1675  ( 707 res)   mia50030

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     72.8    4.1e-17   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/3     383   405 ..     1    23 []    31.5  0.00012
ZnF_C2H2   2/3     411   434 ..     1    23 []    29.8  0.00037
ZnF_C2H2   3/3     440   462 ..     1    23 []    24.4    0.016

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 3, from 383 to 405: score 31.5, E = 0.00012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cgk f++  +L+rH+r+H   
   mKIAA1675   383    YTCRY-CGKIFPRSaNLTRHLRTH    405  

ZnF_C2H2: domain 2 of 3, from 411 to 434: score 29.8, E = 0.00037
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C++ C++sfs  ++L+rH+r++H   
   mKIAA1675   411    YRCKY-CDRSFSISsNLQRHVRnIH    434  

ZnF_C2H2: domain 3 of 3, from 440 to 462: score 24.4, E = 0.016
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C+++f ++++L rH+++H   
   mKIAA1675   440    FKCHL-CNRCFGQQtNLDRHLKKH    462  

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