hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mia/mia50030/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1675 ( 707 res) mia50030 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 83.3 5e-21 3 zf-BED BED zinc finger 12.6 0.15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-C2H2 1/3 383 405 .. 1 24 [] 37.5 3e-07 zf-C2H2 2/3 411 434 .. 1 24 [] 33.7 4.3e-06 zf-BED 1/1 396 435 .. 1 52 [] 12.6 0.15 zf-C2H2 3/3 440 462 .. 1 24 [] 26.3 0.0007 Alignments of top-scoring domains: zf-C2H2: domain 1 of 3, from 383 to 405: score 37.5, E = 3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk F r++nL+rHlrtH mKIAA1675 383 YTCR-YCGKIFPRSANLTRHLRTH 405 zf-C2H2: domain 2 of 3, from 411 to 434: score 33.7, E = 4.3e-06 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ +C++sFs +snL+rH r H mKIAA1675 411 YRCK-YCDRSFSISSNLQRHVRNiH 434 zf-BED: domain 1 of 1, from 396 to 435: score 12.6, E = 0.15 *->SkvWkhFtkveeeedgkevegkakCkhCgkklsrkkksGTsnLirHL +++ +h + + e+ +Ck+C + +s++ snL rH mKIAA1675 396 ANLTRHLRTH-TGEQP------YRCKYCDRSFSIS-----SNLQRHV 430 rrkHp<-* r +H mKIAA1675 431 RNIHN 435 zf-C2H2: domain 3 of 3, from 440 to 462: score 26.3, E = 0.0007 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ C+++F ++ nL rHl++H mKIAA1675 440 FKCH-LCNRCFGQQTNLDRHLKKH 462 //