hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp04236/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1674  ( 439 res)   mbp04236

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_TYP  Leucine-rich repeats, typical (most populate    35.2    8.8e-06   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_TYP    1/2      15    38 ..     1    24 []    29.6  0.00042
LRR_TYP    2/2      39    61 ..     1    24 []     5.6       86

Alignments of top-scoring domains:
LRR_TYP: domain 1 of 2, from 15 to 38: score 29.6, E = 0.00042
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      LpnL+ LdL +N+++ LP+g+ ++   
   mKIAA1674    15    LPNLTWLDLRYNKIKVLPSGIGSH    38   

LRR_TYP: domain 2 of 2, from 39 to 61: score 5.6, E = 86
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                        +L++L L++N ++ LP ++ q    
   mKIAA1674    39    -KHLKTLLLERNPIKMLPVELGQV    61   

//