hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp04236/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1674  ( 439 res)   mbp04236

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_1    Leucine Rich Repeat                             30.8    3.1e-05   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_1      1/3      17    39 ..     1    25 []    14.9        2
LRR_1      2/3      40    62 ..     1    25 []    10.4       38
LRR_1      3/3      63    84 ..     1    25 []     5.9  2.1e+02

Alignments of top-scoring domains:
LRR_1: domain 1 of 3, from 17 to 39: score 14.9, E = 2
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nL++LdL++ N ++ + lp+++++ +   
   mKIAA1674    17    NLTWLDLRY-N-KI-KVLPSGIgSHK    39   

LRR_1: domain 2 of 3, from 40 to 62: score 10.4, E = 38
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L++L L++ N ++ + lp +l+  +   
   mKIAA1674    40    HLKTLLLER-N-PI-KMLPVELgQVT    62   

LRR_1: domain 3 of 3, from 63 to 84: score 5.9, E = 2.1e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L+ L+L++C  +l+   p  l + +   
   mKIAA1674    63    TLTALNLRHC--PLE-FPPR-LiVQK    84   

//