hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05294/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1673  ( 704 res)   mbg05294

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM      RNA recognition motif                           54.9      1e-11   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM        1/2     448   520 ..     1   121 []    32.1  7.4e-05
RRM        2/2     556   629 ..     1   121 []    22.8    0.015

Alignments of top-scoring domains:
RRM: domain 1 of 2, from 448 to 520: score 32.1, E = 7.4e-05
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      ++fVg+L  ppd++e+++   F              ++fG++  v+ 
   mKIAA1673   448    KVFVGGL--PPDIDEDEITASF--------------RRFGPL-IVDW 477  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +++ +++++ +                  +kG+aF  F de+++++   i
   mKIAA1673   478 PHKAESKSYFP------------------PKGYAFLLFQDESSVQAL--I 507  

                   ealnaskGkeledgGrptlglrVe<-*
                   +a           ++ +   l++    
   mKIAA1673   508 DACI--------EEDGK---LYLC    520  

RRM: domain 2 of 2, from 556 to 629: score 22.8, E = 0.015
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      t+fVg++  p      +L  +              ++ +G v ++ i
   mKIAA1673   556    TIFVGGV--PRPLRAVELAMIM-------------DRLYGGVCYAGI 587  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                    +d++                      + +kG + V F+++++  +A  i
   mKIAA1673   588 DTDPE---------------------LKYPKGAGRVAFSNQQSYIAA--I 614  

                   ealnaskGkeledgGrptlglrVe<-*
                   +a       +l  +  +   +  +   
   mKIAA1673   615 SARF----VQL--QHGE---IDKR    629  

//